{"id":"W4295367314","doi":"10.7554/elife.78427","title":"Effectiveness of rapid SARS-CoV-2 genome sequencing in supporting infection control for hospital-onset COVID-19 infection: Multicentre, prospective study","year":2022,"lang":"en","type":"article","venue":"eLife","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"St. Thomas Hospital","funders":"University College London Hospitals NHS Foundation Trust; King's Health Partners; Trinity College Dublin; Medical Research Council; London School of Hygiene and Tropical Medicine; Cardiff University; Research England; University of Glasgow; National Institute for Health and Care Research; Université de Genève; University of Portsmouth; UK Research and Innovation; University of Cambridge; Academy of Medical Sciences; Wellcome Trust","keywords":"Medicine; Incidence (geometry); Outbreak; Infection control; Prospective cohort study; Coronavirus disease 2019 (COVID-19); Emergency medicine; Turnaround time; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Internal medicine; Pediatrics; Intensive care medicine; Virology; Infectious disease (medical specialty)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.02644271,0.001553831,0.00144577,0.0006616915,0.0007232367,0.001674648,0.001199558,0.002479515,0.003205482],"category_scores_gemma":[0.0294336,0.001158363,0.002701973,0.0008020439,0.001841814,0.002293262,0.001654778,0.001797737,0.0004537896],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002235539,"about_ca_system_score_gemma":0.003718992,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003615094,"about_ca_topic_score_gemma":0.00394285,"domain_scores_codex":[0.9714547,0.02143761,0.001934205,0.00242812,0.001264859,0.001480423],"domain_scores_gemma":[0.9728206,0.01145584,0.007310393,0.002472472,0.001807673,0.004132965],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"randomized_trial","study_design_gemma":"observational","study_design_scores_codex":[0.7422071,0.07603425,0.1132207,0.002417369,0.004843412,0.0001804987,0.0017138,0.002144493,0.001854991,0.0002523618,0.001063711,0.05406747],"study_design_scores_gemma":[0.1282952,0.7253581,0.1394385,0.0003602113,0.002965946,0.0001192349,0.0004556167,0.00127157,0.0006279271,0.0001633835,0.0008519312,0.00009245867],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966357,0.0007072507,0.0002749239,0.0001641649,0.00007590034,0.001465731,0.0002030164,0.00001295922,0.0004603173],"genre_scores_gemma":[0.9967885,0.0003048631,0.001093704,0.0001929868,0.000122286,0.001157785,0.0001938428,0.000006419097,0.0001395788],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02644271,"threshold_uncertainty_score":0.1398441,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03971748599542529,"score_gpt":0.3749941967446634,"score_spread":0.3352767107492381,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}