{"id":"W4295886858","doi":"10.1128/spectrum.01151-22","title":"Immunoinformatics Approach to Design Novel Subunit Vaccine against the Epstein-Barr Virus","year":2022,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"vaccines and immunoinformatics approaches","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"","keywords":"Epitope; Immune system; Virology; Virus; Biology; Epstein–Barr virus; CTL*; Cytotoxic T cell; Immunology; Antigen; CD8; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007396749,0.0003367329,0.0003033824,0.0001133021,0.0007227836,0.00005732202,0.001081941,0.0001367407,0.0000668782],"category_scores_gemma":[0.00004200437,0.0002566285,0.0001634015,0.0003200618,0.00005720346,0.000008807463,0.001040735,0.0003948932,0.00006734993],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006822858,"about_ca_system_score_gemma":0.000118094,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002792951,"about_ca_topic_score_gemma":0.00000974328,"domain_scores_codex":[0.9982604,0.0001321343,0.0005530256,0.0003347723,0.00009035684,0.0006293256],"domain_scores_gemma":[0.9987335,0.0000287052,0.0002055364,0.0009127133,0.00004276658,0.00007675328],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00025808,0.000228726,0.00006230041,0.00001731369,0.0001984136,7.902152e-7,0.0006235397,0.0122166,0.9625506,0.0004532223,0.02295183,0.0004385631],"study_design_scores_gemma":[0.002759346,0.001756273,0.0005456403,0.000007970586,0.00008155665,0.0009158361,0.003458089,0.004686113,0.3181027,0.00008602944,0.6664964,0.00110407],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8929856,0.002072095,0.08868965,0.003058507,0.0009135333,0.002393273,0.0004649119,0.00009950254,0.009322939],"genre_scores_gemma":[0.9810407,0.0001300415,0.009094264,0.005867943,0.0002114123,0.0003062658,0.001551707,0.00007228225,0.001725367],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.644448,"threshold_uncertainty_score":0.9999886,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01450863550682938,"score_gpt":0.2058929380504646,"score_spread":0.1913843025436352,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}