{"id":"W4295919147","doi":"10.1093/ve/veac074","title":"Evolutionary features of a prolific subtype of avian influenza A virus in European waterfowl","year":2022,"lang":"en","type":"article","venue":"Virus Evolution","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Australian Research Council; Vetenskapsrådet; Naturvårdsverket; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; Division of Intramural Research, National Institute of Allergy and Infectious Diseases; Biotechnology and Biological Sciences Research Council; Jordbruksverket","keywords":"Biology; Waterfowl; Anas; Reassortment; Phylogenetic tree; Lineage (genetic); Population; Hemagglutinin (influenza); Evolutionary biology; Clade; Virus; Zoology; Genetics; Genome; Gene; Ecology; Demography","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009312077,0.0001966038,0.0004435766,0.0007598369,0.0001918434,0.00000479517,0.000224544,0.00005794754,0.0002195676],"category_scores_gemma":[0.000365999,0.0001843739,0.0001396772,0.0009565032,0.0002685646,0.000122786,0.0004095475,0.0005417737,0.00004850535],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000648208,"about_ca_system_score_gemma":0.0002962857,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002311784,"about_ca_topic_score_gemma":0.0001740843,"domain_scores_codex":[0.9971977,0.0005102871,0.0006414134,0.0003470076,0.0008669303,0.0004366418],"domain_scores_gemma":[0.9989015,0.00006402089,0.00023478,0.0004509988,0.0002599819,0.00008870981],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.006645366,0.00163659,0.2608151,0.0006655767,0.0002455674,0.0001328115,0.003999372,0.001274911,0.7141798,0.001771163,0.005341342,0.00329252],"study_design_scores_gemma":[0.002392391,0.001032003,0.9743561,0.0001249737,0.00005378731,0.00004481529,0.0004746631,0.0002735605,0.01067582,0.000345505,0.01003731,0.000189146],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9867126,0.006246255,0.00001788511,0.0001382252,0.0001290208,0.0008362158,0.0001930479,0.00006085458,0.005665923],"genre_scores_gemma":[0.9988862,0.00009128858,0.000237412,0.000154465,0.00007374448,0.00009976381,0.00003350511,0.00003692352,0.0003866444],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.713541,"threshold_uncertainty_score":0.7518551,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04466967260238313,"score_gpt":0.3237539408202757,"score_spread":0.2790842682178926,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}