{"id":"W4295929598","doi":"10.1101/gr.276375.121","title":"Chromosome-scale assemblies of <i>Acanthamoeba castellanii</i> genomes provide insights into <i>Legionella pneumophila</i> infection–related chromatin reorganization","year":2022,"lang":"en","type":"article","venue":"Genome Research","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Dalhousie University","funders":"Dalhousie University; Fondation pour la Recherche Médicale; Agence Nationale de la Recherche; Natural Sciences and Engineering Research Council of Canada; European Commission; Oxford Nanopore Technologies; Gordon and Betty Moore Foundation","keywords":"Biology; Legionella pneumophila; Genome; Legionella; Chromatin; Gene; Genetics; Microbiology; Cell biology; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004230574,0.0007990504,0.0005611427,0.002125012,0.0007696329,0.001015765,0.0005037671,0.0005571146,0.002718678],"category_scores_gemma":[0.0014963,0.0004871352,0.001163746,0.001633514,0.0002354842,0.0005697349,0.0006846994,0.0009657053,0.001541439],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004663701,"about_ca_system_score_gemma":0.0006646867,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005272326,"about_ca_topic_score_gemma":0.01400546,"domain_scores_codex":[0.9996727,0.00003274324,0.00002570129,0.0001389704,0.00008130171,0.00004867658],"domain_scores_gemma":[0.9987468,0.000310476,0.0002800627,0.0001622808,0.0003328714,0.0001675696],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006469325,0.00009441838,0.02086854,0.001245242,0.0004103789,0.0003617206,0.0005243763,0.003141965,0.9394291,0.0009450433,0.002241032,0.03009117],"study_design_scores_gemma":[0.000121524,0.0006252439,0.4212612,0.0004842249,0.001128331,0.001320165,0.0009603403,0.02461266,0.446952,0.003482385,0.09883035,0.0002216453],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7807974,0.005233075,0.07934321,0.0004076587,0.0002109963,0.0001984854,0.1235956,0.003668,0.006545565],"genre_scores_gemma":[0.6070456,0.002144315,0.1357685,0.0002368319,0.00007398766,0.0002127448,0.2492711,0.001755232,0.003491758],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005272326,"threshold_uncertainty_score":0.01048326,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01884096402298276,"score_gpt":0.2855539230995398,"score_spread":0.266712959076557,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}