{"id":"W4295941942","doi":"10.1158/1557-3265.sarcomas22-ia015","title":"Abstract IA015: ASPSCR1-TFE3 reprograms transcription by organizing enhancer loops","year":2022,"lang":"en","type":"article","venue":"Clinical Cancer Research","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"TFE3; Enhancer; Chromatin; Biology; Transcription factor; Fusion gene; Chromosomal translocation; Cell biology; Molecular biology; Gene; Genetics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009585576,0.0003354267,0.0001904507,0.0002084265,0.0002301325,0.0003589877,0.0002470559,0.0002708851,0.004923959],"category_scores_gemma":[0.0001075729,0.0001286483,0.0002700857,0.0002148597,0.0002963775,0.0001477801,0.0002404773,0.0005561382,0.001908479],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006124539,"about_ca_system_score_gemma":0.0002371912,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001023981,"about_ca_topic_score_gemma":0.001577302,"domain_scores_codex":[0.9998591,0.00000889753,0.00001019299,0.00003518233,0.0000589861,0.00002756467],"domain_scores_gemma":[0.9999242,0.0000115656,0.00002041852,0.00001046109,0.000009825611,0.0000236636],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007059315,0.000006332351,0.0001184214,0.00001661797,0.000001755359,0.00002660815,0.000005088609,0.00002460952,0.9988298,0.0000575567,0.0001050816,0.0007375011],"study_design_scores_gemma":[0.000007249179,0.00005086041,0.004253876,0.000002849523,0.000005724284,0.0002097675,0.00001452257,0.0003735523,0.9909056,0.00003375491,0.004139892,0.000002460369],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9790466,0.002020674,0.009137264,0.0004703242,0.0001641368,0.00003392774,0.003034138,0.0007876667,0.005305402],"genre_scores_gemma":[0.9775577,0.0005772426,0.004196407,0.0001132579,0.00002459318,0.0000224954,0.004463711,0.0001345875,0.01291014],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004923959,"threshold_uncertainty_score":0.01647234,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1243870236699102,"score_gpt":0.4627755114023473,"score_spread":0.3383884877324371,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}