{"id":"W4296035686","doi":"10.1111/mec.16694","title":"<i>Borrelia burgdorferi</i> strain and host sex influence pathogen prevalence and abundance in the tissues of a laboratory rodent host","year":2022,"lang":"en","type":"article","venue":"Molecular Ecology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Université de Montréal; University of Saskatchewan","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; Saskatchewan Health Research Foundation; Public Health Agency of Canada","keywords":"Biology; Borrelia burgdorferi; Pathogen; Rodent; Host (biology); Tick; Strain (injury); Borrelia Burgdorferi Infection; Spirochaetaceae; Microbiology; Polymerase chain reaction; Virology; Immunology; Antibody; Genetics; Gene; Anatomy; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004156966,0.0001571167,0.0002572908,0.00009306762,0.0001652745,0.0000111289,0.000264261,0.0001052319,0.0001530437],"category_scores_gemma":[0.0001489529,0.0001468699,0.00003048046,0.0002103693,0.000431421,0.0000509038,0.0002568217,0.0002989289,0.000007889343],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000400577,"about_ca_system_score_gemma":0.0001028557,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001438381,"about_ca_topic_score_gemma":0.0001684501,"domain_scores_codex":[0.9982008,0.0008473865,0.0002525369,0.000361269,0.00005282781,0.0002851607],"domain_scores_gemma":[0.9993252,0.0001780157,0.0001282995,0.0002994761,0.00004822289,0.00002081933],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004804702,0.0001856841,0.3567303,0.00006286434,0.00005236222,0.0001362607,0.001130319,0.00006070181,0.6407546,0.0005448834,0.0001046578,0.000189407],"study_design_scores_gemma":[0.0008085413,0.000713809,0.9789814,0.0000139321,0.00005730792,0.0002143194,0.0005076398,0.000004589059,0.01402114,0.0001423166,0.004343008,0.0001919325],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9846919,0.01398923,0.000009463438,0.0002840533,0.0001239706,0.0004057471,0.0004195032,0.00002365863,0.00005246358],"genre_scores_gemma":[0.9983004,0.0003070765,0.00001504738,0.001105508,0.000005124519,0.0001840217,0.00002031261,0.00001371729,0.00004879049],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6267334,"threshold_uncertainty_score":0.5989179,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003549940697952045,"score_gpt":0.2150124636909738,"score_spread":0.2114625229930218,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}