{"id":"W4296037792","doi":"10.1038/s41589-022-01127-y","title":"Diene incorporation by a dehydratase domain variant in modular polyketide synthases","year":2022,"lang":"en","type":"article","venue":"Nature Chemical Biology","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":false,"ca_institutions":"Willow Biosciences (Canada)","funders":"Biotechnology and Biological Sciences Research Council; Engineering and Physical Sciences Research Council; University of Warwick; Research Councils UK; Royal Society","keywords":"Polyketide; Thioester; Stereochemistry; Chemistry; Dehydratase; Polyketide synthase; Biosynthesis; Biochemistry; Enzyme","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000294686,0.0001627774,0.000318809,0.0001054696,0.00006932542,0.000006121806,0.0001551775,0.0003656555,0.0003850635],"category_scores_gemma":[0.0004988566,0.000124802,0.00006704801,0.0003740657,0.00009729395,0.00003048904,0.0001677033,0.00108547,0.000006708259],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001635349,"about_ca_system_score_gemma":0.00005593957,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006556218,"about_ca_topic_score_gemma":0.00000661033,"domain_scores_codex":[0.9987416,0.0001199173,0.0002621062,0.0004747874,0.0001214002,0.0002801657],"domain_scores_gemma":[0.9994438,0.00009752531,0.00008488831,0.0002484859,0.00003693775,0.00008838008],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004982203,0.0002549345,0.0003184668,0.00002013287,0.00001744359,0.000134458,0.00001873754,5.749888e-7,0.9853575,0.0005693103,0.01067065,0.002139521],"study_design_scores_gemma":[0.0009062143,0.0002278554,0.0001281693,0.00001732719,0.00002933471,0.0003119152,0.00003057479,0.00002487637,0.9208367,0.001703402,0.07557848,0.0002051121],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9853654,0.003389057,0.00001360815,0.01012854,0.0001991085,0.0002975129,0.0004126514,0.00004112233,0.0001529979],"genre_scores_gemma":[0.9941293,0.00003666301,0.0009041324,0.003068109,0.0001823525,0.000009970913,0.001583267,0.0000136079,0.00007259423],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06490783,"threshold_uncertainty_score":0.5089278,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005159581301330598,"score_gpt":0.2379937650839971,"score_spread":0.2328341837826665,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}