{"id":"W4296070451","doi":"10.1101/2022.09.16.508052","title":"A highly contiguous genome assembly of red perilla ( <i>Perilla frutescens</i> ) domesticated in Japan","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Natural Products and Biological Research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Co-creation place formation support program; Institute of Genetics; Japan Society for the Promotion of Science","keywords":"Perilla frutescens; Contig; Rosmarinic acid; Perilla; Lamiaceae; Genome; Sequence assembly; Biology; Gene; Whole genome sequencing; Computational biology; Botany; Genetics; Transcriptome; Food science; Biochemistry; Gene expression","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003459687,0.0007902778,0.0006971423,0.001308699,0.0007406136,0.0006714749,0.000492314,0.0004850719,0.002018087],"category_scores_gemma":[0.0006153364,0.0004824876,0.00115302,0.001478676,0.0002328149,0.0003471386,0.0005909024,0.0008639469,0.001328223],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006085102,"about_ca_system_score_gemma":0.0008591642,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008777552,"about_ca_topic_score_gemma":0.009782421,"domain_scores_codex":[0.999749,0.00002257325,0.00001794076,0.0001290099,0.0000482166,0.00003312883],"domain_scores_gemma":[0.9997461,0.00005037688,0.00005336119,0.00003174108,0.00007026609,0.00004803416],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006080339,0.00006833079,0.00387188,0.0005978045,0.0001082754,0.0006527004,0.0005591962,0.002066449,0.9632871,0.000612569,0.002125649,0.02544207],"study_design_scores_gemma":[0.0003852847,0.0008263862,0.2894829,0.000441734,0.001423736,0.002057217,0.001220615,0.04691783,0.4946925,0.001956978,0.160319,0.0002756616],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.805966,0.003209478,0.1014724,0.0005828189,0.0002739742,0.0003690026,0.07706139,0.003845901,0.007218998],"genre_scores_gemma":[0.5646795,0.001965488,0.1523083,0.0002315117,0.00007238757,0.0002993485,0.2692247,0.002199628,0.009019142],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008777552,"threshold_uncertainty_score":0.01745296,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02481036954181519,"score_gpt":0.2724437656597297,"score_spread":0.2476333961179145,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}