{"id":"W4296106929","doi":"10.3389/fmicb.2022.885588","title":"Human milk microbiome is shaped by breastfeeding practices","year":2022,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill Genome Centre; McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Consejo Mexiquense de Ciencia y Tecnología; McGill University","keywords":"Firmicutes; Bacteroidetes; Lactation; Breastfeeding; Actinobacteria; Biology; Proteobacteria; Abundance (ecology); Microbiome; Ecology; Medicine; Pregnancy; Bacteria; Pediatrics; Bioinformatics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003926397,0.0001496402,0.0002624815,0.0004022957,0.0003543406,0.0005379987,0.0001547322,0.0002694085,0.0008972223],"category_scores_gemma":[0.002134285,0.0001525984,0.0001513834,0.0006802654,0.0003565,0.0002391461,0.0005775416,0.0001877204,0.0001503341],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004219741,"about_ca_system_score_gemma":0.0003768483,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01654349,"about_ca_topic_score_gemma":0.02032432,"domain_scores_codex":[0.9995419,0.0001696001,0.00001734017,0.0001129013,0.00007286906,0.00008529222],"domain_scores_gemma":[0.9993464,0.0001379862,0.0003135298,0.00004107775,0.00009094917,0.00007007193],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002212488,0.00001805418,0.9786824,0.00005861192,0.00008778483,0.0001055483,0.001756379,0.00005813672,0.007207969,0.00004258536,0.0001602976,0.01160084],"study_design_scores_gemma":[5.972083e-7,0.00002092262,0.9988853,0.00001086561,0.000009378894,0.00005814472,0.0005207133,0.00004454056,0.0001157341,0.00002390762,0.0003080215,0.000001823394],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985091,0.0007229826,0.00007712679,0.0001119554,0.000003340408,0.000003092347,0.0001357305,0.000003350049,0.0004332581],"genre_scores_gemma":[0.9990692,0.0004213802,0.0001419691,0.00005748908,0.000004374841,0.000005954485,0.0001012931,0.000003282184,0.0001950553],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01654349,"threshold_uncertainty_score":0.03289437,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01010027520853181,"score_gpt":0.2699250757737065,"score_spread":0.2598248005651747,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}