{"id":"W4296177167","doi":"10.1016/j.anaerobe.2022.102640","title":"Multi-year comparison of VITEK® MS and 16S rRNA gene sequencing performance for the identification of rarely encountered anaerobes causing invasive human infections in a large Canadian region: can our laboratory abandon 16S rRNA gene sequencing?","year":2022,"lang":"en","type":"article","venue":"Anaerobe","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"16S ribosomal RNA; Biology; Microbiology; Bacilli; Anaerobic bacteria; Clinical microbiology; Anaerobic exercise; Ribosomal RNA; Gram-Positive Cocci; Metagenomics; Bacteria; Gene; Genetics; Staphylococcus aureus; Physiology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006874018,0.0006508901,0.0006812474,0.001563735,0.001502185,0.001710849,0.00167773,0.001329288,0.0006993549],"category_scores_gemma":[0.01002083,0.0004279601,0.0006662488,0.001958266,0.0008945846,0.001026456,0.0007975416,0.001090995,0.000320487],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01290938,"about_ca_system_score_gemma":0.01231376,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.8966122,"about_ca_topic_score_gemma":0.9397311,"domain_scores_codex":[0.9959746,0.0002854907,0.0001628824,0.0006415429,0.002419588,0.0005159344],"domain_scores_gemma":[0.9833881,0.001316184,0.001393767,0.0004970413,0.01237938,0.001025561],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001559595,0.0001644283,0.9444835,0.0001580653,0.0005280963,0.0002105612,0.001756663,0.001006262,0.01776618,0.0001322437,0.002709646,0.0295248],"study_design_scores_gemma":[0.000007733477,0.0002549207,0.993445,0.00002848046,0.0001042924,0.0001456257,0.0006801853,0.0009744649,0.002238105,0.00001865158,0.00206832,0.00003422498],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9905652,0.001805235,0.001508509,0.0007741654,0.0001136479,0.0000417007,0.00292476,0.0001235668,0.002143397],"genre_scores_gemma":[0.9946275,0.0004937938,0.001680936,0.0003928953,0.00002395214,0.00001390627,0.001654163,0.00003966063,0.001073156],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8966122,"threshold_uncertainty_score":0.2079933,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03951692836737112,"score_gpt":0.2883126145046886,"score_spread":0.2487956861373175,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}