{"id":"W4296515891","doi":"10.1093/mmy/myac072.s8.5c","title":"S8.5c MLST genotyping and phylogenetics of AD-hybrids","year":2022,"lang":"en","type":"article","venue":"Medical Mycology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"","keywords":"Multilocus sequence typing; Genotyping; Biology; Genotype; Allele; Genetics; Cryptococcus neoformans; Locus (genetics); Typing; Population; Haplotype; Hybrid; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002546521,0.00006233214,0.0002572623,0.00007283979,0.0001437556,0.000001093418,0.00004575051,0.00005378477,0.002023606],"category_scores_gemma":[0.0003536361,0.00005374061,0.00003641562,0.0001304399,0.0002284805,0.000004426018,0.0002054322,0.0002580102,0.0000046154],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000282558,"about_ca_system_score_gemma":0.00008787044,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003446091,"about_ca_topic_score_gemma":0.00001671462,"domain_scores_codex":[0.9992521,0.00006714269,0.0001858178,0.0001356905,0.0002053396,0.0001539483],"domain_scores_gemma":[0.999546,0.0001769812,0.00003655061,0.0001008987,0.00003655005,0.000103017],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009988261,0.002656481,0.6042022,0.0009982948,0.001423674,0.001519294,0.004262106,0.00007478526,0.08099142,0.01096883,0.07144909,0.2204551],"study_design_scores_gemma":[0.003331591,0.004888993,0.4951468,0.00004631617,0.000267083,0.001778379,0.001026067,0.001413684,0.001319653,0.0009004397,0.4896441,0.000236964],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9881221,0.003725743,0.0001397699,0.003680745,0.0004554974,0.0001326472,0.000009288093,0.00002125897,0.003712952],"genre_scores_gemma":[0.9974208,0.0005389996,0.0002486924,0.001304398,0.00009208386,0.00003337429,0.000005655753,0.000007359694,0.0003486282],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.418195,"threshold_uncertainty_score":0.9988887,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01126589309491266,"score_gpt":0.2723450937884784,"score_spread":0.2610792006935657,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}