{"id":"W4296553202","doi":"10.1099/mgen.0.000880","title":"Exploring the mobilome and resistome of Enterococcus faecium in a One Health context across two continents","year":2022,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; McMaster University; Public Health Agency of Canada; Dalhousie University; Simon Fraser University; University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Research Nova Scotia; Simon Fraser University; Dalhousie University; Canadian Institutes of Health Research; Genome Canada; Canadian Institute for Advanced Research","keywords":"Enterococcus faecium; Mobile genetic elements; Biology; Resistome; Genetics; Antibiotic resistance; Genome; Context (archaeology); Horizontal gene transfer; Virulence; Evolutionary biology; Gene; Computational biology; Antibiotics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003817049,0.0002690248,0.0004876398,0.001392764,0.0007249321,0.0009676827,0.0001875744,0.0003815819,0.001013782],"category_scores_gemma":[0.001118721,0.0001310295,0.0003993617,0.001938341,0.0003992745,0.0002749759,0.001034885,0.0003927091,0.0002038372],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000563493,"about_ca_system_score_gemma":0.0008390469,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02291388,"about_ca_topic_score_gemma":0.03431002,"domain_scores_codex":[0.9996743,0.00006153236,0.00002194008,0.00009809802,0.00005753405,0.00008663438],"domain_scores_gemma":[0.9994712,0.0001185489,0.0001231204,0.00004681456,0.0001447711,0.00009561198],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001293938,0.0001506797,0.7392462,0.0006016397,0.000747559,0.001918441,0.008394429,0.0008585286,0.1953239,0.0008191836,0.001954819,0.04869074],"study_design_scores_gemma":[0.000008794302,0.0001365512,0.9849994,0.00008425321,0.0001087358,0.0006918442,0.004817375,0.0003459607,0.002103364,0.0001978204,0.006485347,0.00002055633],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962969,0.0006940016,0.0003693158,0.0001649164,0.000008093043,0.000007240837,0.001678087,0.00000668529,0.0007746971],"genre_scores_gemma":[0.9929788,0.0006616852,0.001423975,0.0002812078,0.000008453826,0.00001397684,0.004193144,0.00001784589,0.0004210312],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02291388,"threshold_uncertainty_score":0.04556102,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08489041439927383,"score_gpt":0.3042884886184681,"score_spread":0.2193980742191943,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}