{"id":"W4296553202","doi":"10.1099/mgen.0.000880","title":"Exploring the mobilome and resistome of Enterococcus faecium in a One Health context across two continents","year":2022,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; McMaster University; Public Health Agency of Canada; Dalhousie University; Simon Fraser University; University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Research Nova Scotia; Simon Fraser University; Dalhousie University; Canadian Institutes of Health Research; Genome Canada; Canadian Institute for Advanced Research","keywords":"Enterococcus faecium; Mobile genetic elements; Biology; Resistome; Genetics; Antibiotic resistance; Genome; Context (archaeology); Horizontal gene transfer; Virulence; Evolutionary biology; Gene; Computational biology; Antibiotics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008643388,0.0002165922,0.0006562716,0.0001382197,0.0003077202,0.00002621888,0.0002760075,0.0000307487,0.00003522507],"category_scores_gemma":[0.00005901991,0.0002066049,0.0001222547,0.0003421613,0.0002752534,0.00007409701,0.0004941992,0.0004873743,0.000005957318],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006009647,"about_ca_system_score_gemma":0.0002171928,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001419423,"about_ca_topic_score_gemma":0.001208939,"domain_scores_codex":[0.9978809,0.0001570676,0.0007672196,0.0004203528,0.0002107673,0.0005637251],"domain_scores_gemma":[0.998926,0.0001140082,0.0003262449,0.0004525136,0.00006928241,0.0001118939],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002799234,0.0005290505,0.01653144,0.0002666618,0.0001108041,0.0000452106,0.01621705,0.0001362558,0.9520945,0.0001387598,0.001079408,0.01005167],"study_design_scores_gemma":[0.04486543,0.002822412,0.5287662,0.001281088,0.0002273366,0.0004809404,0.0412148,0.0001358806,0.1330458,0.0001823047,0.245176,0.001801828],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949131,0.0008962114,0.00004669257,0.002229738,0.0003219928,0.001141057,0.0003633967,0.00002493068,0.00006290872],"genre_scores_gemma":[0.9972287,0.0003582096,0.0003151981,0.001467756,0.00009253048,0.00009403422,0.00003344091,0.00004858281,0.0003615815],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8190486,"threshold_uncertainty_score":0.8425104,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08489041439927383,"score_gpt":0.3042884886184681,"score_spread":0.2193980742191943,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}