{"id":"W4296618053","doi":"10.1093/jas/skac247.565","title":"PSVIII-B-15 Potential Involvement of DNA Methylation of First Intron in Transcriptional Regulation During Bovine Subclinical Mastitis Caused by Staphylococcus Aureus","year":2022,"lang":"en","type":"article","venue":"Journal of Animal Science","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"DNA methylation; Biology; Gene; Methylated DNA immunoprecipitation; Methylation; Differentially methylated regions; Intron; Molecular biology; DNA; Genetics; Transcriptome; CpG site; Bisulfite sequencing; DNA sequencing; genomic DNA; Genome; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002915715,0.0001472887,0.0002825309,0.0003116035,0.0001514543,0.0003379417,0.0001125099,0.0002099854,0.001870291],"category_scores_gemma":[0.0004376188,0.0001261259,0.0002183174,0.0003214519,0.0001577187,0.00008924136,0.0002024245,0.000319772,0.000551814],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002286226,"about_ca_system_score_gemma":0.0001948259,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001486896,"about_ca_topic_score_gemma":0.001302844,"domain_scores_codex":[0.9998023,0.00002792937,0.00001042407,0.00006174629,0.00005747691,0.00004022209],"domain_scores_gemma":[0.9998096,0.00004002628,0.00006243117,0.00001353952,0.00003202459,0.0000424248],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005930881,0.0000279192,0.03005843,0.00009771057,0.00003078417,0.000114981,0.0001274951,0.000359698,0.9601544,0.0001002777,0.0002024674,0.008132699],"study_design_scores_gemma":[0.00003152751,0.0006502447,0.7176495,0.00006315368,0.00007613125,0.0008926271,0.0003019255,0.007810415,0.2656012,0.0005666231,0.00633131,0.00002542654],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9912146,0.001394298,0.004263404,0.0000798164,0.00002012841,0.00001653769,0.00208394,0.0001020196,0.0008251909],"genre_scores_gemma":[0.9949826,0.0002421039,0.001993779,0.00004426612,0.000006175232,0.0000211701,0.001758201,0.00002890873,0.0009227194],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001870291,"threshold_uncertainty_score":0.006256819,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02526548508099149,"score_gpt":0.2521488668637724,"score_spread":0.2268833817827809,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}