{"id":"W4296738450","doi":"10.21203/rs.3.rs-1878982/v1","title":"Genomic attributes of Vibrio cholerae responsible for a massive cholera outbreak in Bangladesh, 2022","year":2022,"lang":"en","type":"preprint","venue":"Research Square","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Foreign, Commonwealth and Development Office; National Institute of Allergy and Infectious Diseases; Global Affairs Canada; Japan Agency for Medical Research and Development; International Centre for Diarrhoeal Disease Research, Bangladesh; Styrelsen för Internationellt Utvecklingssamarbete; National Science Foundation","keywords":"Vibrio cholerae; Cholera; Outbreak; Microbiology; Biology; Virology; Genetics; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001631572,0.000434477,0.0002126162,0.0009975838,0.0006523771,0.0007746196,0.0001733815,0.0005365417,0.002727478],"category_scores_gemma":[0.0006411448,0.0002351497,0.0003691928,0.002304577,0.0002348114,0.0002203337,0.0004481861,0.0004583745,0.001227967],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005531196,"about_ca_system_score_gemma":0.0004738701,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01388146,"about_ca_topic_score_gemma":0.01438179,"domain_scores_codex":[0.9998004,0.00001737111,0.00002083918,0.00006938291,0.00003715422,0.0000548391],"domain_scores_gemma":[0.9996628,0.00005089796,0.0001006804,0.00003451738,0.00008852028,0.00006258259],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001231921,0.0001122702,0.5752347,0.0004270268,0.0001584887,0.002521394,0.002269126,0.001610723,0.3982949,0.0002960753,0.002942855,0.01490058],"study_design_scores_gemma":[0.00001800185,0.0001419157,0.9797102,0.00004881852,0.00006885289,0.001318076,0.00303593,0.0004827419,0.005734826,0.0001562547,0.009257399,0.00002700482],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9820899,0.0004863465,0.0003489582,0.0001702468,0.00001864638,0.00002745921,0.0146134,0.00002542777,0.002219687],"genre_scores_gemma":[0.9719305,0.000551369,0.0008262022,0.0001502597,0.0000134139,0.00003218471,0.02541836,0.00001903963,0.001058688],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01388146,"threshold_uncertainty_score":0.0276013,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05508089135089125,"score_gpt":0.3823573153409979,"score_spread":0.3272764239901066,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}