{"id":"W4296777855","doi":"10.1089/phage.2022.0003","title":"Genomic Profiling of Non-O157 Shiga Toxigenic <i>Escherichia coli</i> -Infecting Bacteriophages from South Africa","year":2022,"lang":"en","type":"article","venue":"PHAGE","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Science Centre for Human and Animal Health; Public Health Agency of Canada; Agriculture and Agri-Food Canada; University of Lethbridge; University of Calgary","funders":"","keywords":"Biology; Escherichia coli; Lysogenic cycle; Genomics; Microbiology; Genome; Bacteriophage; GenBank; Antibiotic resistance; Shiga toxin; Genetics; Gene; Antibiotics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001918757,0.0001887913,0.0002439834,0.00004047484,0.0003841203,0.00004289705,0.0003547926,0.00003965233,0.01175248],"category_scores_gemma":[0.00001589393,0.0002029059,0.0001500137,0.0002942962,0.00007289237,0.0002053841,0.0006604047,0.0003228992,0.0003156498],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002247064,"about_ca_system_score_gemma":0.00002285246,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00069809,"about_ca_topic_score_gemma":0.00003109645,"domain_scores_codex":[0.9986379,0.00009060936,0.0003448763,0.0003982859,0.0001765713,0.0003517989],"domain_scores_gemma":[0.9992825,0.00006416208,0.0002405472,0.0003148488,0.000006925235,0.00009101972],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002732876,0.0001143204,0.003954368,0.000007536107,0.00002878442,0.00001032581,0.003212875,0.0003593728,0.9911625,0.000001833653,0.0002355751,0.0008851399],"study_design_scores_gemma":[0.0009796316,0.0002781895,0.2550315,0.00002047087,0.0001334038,0.0000146184,0.002034245,0.001417741,0.719634,0.00005858824,0.01973033,0.0006672409],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.992962,0.0001005954,0.0004674273,0.00004190809,0.0004749311,0.0003033764,0.0002448424,0.00005537969,0.005349531],"genre_scores_gemma":[0.9962189,0.000006826734,0.002193478,0.0001680737,0.00007343147,0.00006743032,0.0000407401,0.00003699055,0.001194175],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2715285,"threshold_uncertainty_score":0.9891509,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01196503402768317,"score_gpt":0.2201035263019329,"score_spread":0.2081384922742498,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}