{"id":"W4296911512","doi":"10.1101/2022.09.19.508597","title":"Eliminating Genes for a Two Component System Increases PHB Productivity in <i>Cupriavidus basilensis</i> 4G11 Under PHB Suppressing, Non-Stress Conditions","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"biodegradable polymer synthesis and properties","field":"Materials Science","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Genome British Columbia; University of British Columbia","funders":"","keywords":"Bioproduction; Mutant; Biology; Bacteria; Bioplastic; Gene; Polyhydroxybutyrate; Biochemistry; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002104594,0.0008563277,0.0003661633,0.0004213013,0.0001803882,0.0004568223,0.0006049062,0.0004160752,0.001457491],"category_scores_gemma":[0.000218853,0.0002063086,0.000338342,0.0002891614,0.0003201691,0.0001419272,0.0004335527,0.0007302642,0.0004602127],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005849052,"about_ca_system_score_gemma":0.00033457,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002967845,"about_ca_topic_score_gemma":0.002935648,"domain_scores_codex":[0.9996442,0.00004154518,0.00004017007,0.00007073666,0.0001408425,0.0000625535],"domain_scores_gemma":[0.9995678,0.0001044397,0.0001529999,0.00005106529,0.00004043092,0.00008331097],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003690358,0.00002763487,0.0001135051,0.00001622957,0.000004079601,0.00002454898,0.000004697486,0.0000585393,0.9993091,0.00002253914,0.00002421263,0.0003581309],"study_design_scores_gemma":[0.00001313151,0.0002684239,0.005666761,0.000007023988,0.00002268093,0.0001404346,0.00003735626,0.001246142,0.9914737,0.00001757189,0.001095563,0.00001129461],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954616,0.0001734285,0.002252175,0.0001162244,0.00002701235,0.00003840021,0.0009339164,0.0002552153,0.0007419261],"genre_scores_gemma":[0.9915355,0.000186179,0.003147694,0.00007745199,0.000009783835,0.0000509602,0.00228178,0.0001497981,0.002560693],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002967845,"threshold_uncertainty_score":0.005901098,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02383190643973395,"score_gpt":0.2399461171728463,"score_spread":0.2161142107331124,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}