{"id":"W4297183131","doi":"10.1038/s41396-022-01321-9","title":"Gastric acid and escape to systemic circulation represent major bottlenecks to host infection by <i>Citrobacter rodentium</i>","year":2022,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Citrobacter rodentium; Biology; Host (biology); Citrobacter; Microbiology; Ecology; Enterobacteriaceae; Escherichia coli; Pathogen; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004755776,0.0001038457,0.0001060349,0.00006964045,0.0004612517,0.00007399533,0.0001371357,0.0000447213,0.0000589846],"category_scores_gemma":[0.00002160204,0.00008485526,0.00005486672,0.0001387291,0.0000114397,0.000005511331,0.0001999247,0.0002206182,0.00001289705],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007924874,"about_ca_system_score_gemma":0.00005695177,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005388521,"about_ca_topic_score_gemma":0.00001617333,"domain_scores_codex":[0.9990171,0.0001724916,0.0002204187,0.0002078589,0.0001505752,0.0002316162],"domain_scores_gemma":[0.9994748,0.000005353088,0.0001085565,0.0002139639,0.00005356193,0.0001437168],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0000578176,0.00002403693,0.006982066,0.000009077078,0.00002402928,0.000001272522,0.0001374282,0.0003483282,0.9662116,0.000002752336,0.02575273,0.0004488511],"study_design_scores_gemma":[0.003651243,0.002939497,0.5380822,0.000142341,0.0002750986,0.01514831,0.00104153,0.0001841468,0.2049387,0.0001197786,0.232307,0.001170213],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9928312,0.0006411842,0.003692757,0.002090227,0.0003760548,0.0002649158,0.00002312791,0.000006805948,0.00007373823],"genre_scores_gemma":[0.9974901,0.0001433231,0.00009567723,0.001387782,0.0003228805,0.0000199633,0.00002363064,0.0000164206,0.0005001861],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7612729,"threshold_uncertainty_score":0.3547622,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005909849005387527,"score_gpt":0.232983751351527,"score_spread":0.2270739023461395,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}