{"id":"W4297183131","doi":"10.1038/s41396-022-01321-9","title":"Gastric acid and escape to systemic circulation represent major bottlenecks to host infection by <i>Citrobacter rodentium</i>","year":2022,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Citrobacter rodentium; Biology; Host (biology); Citrobacter; Microbiology; Ecology; Enterobacteriaceae; Escherichia coli; Pathogen; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002891782,0.0002962603,0.0002833796,0.0002595185,0.0001820817,0.0004548853,0.0002735633,0.0002423625,0.0008469127],"category_scores_gemma":[0.0003483312,0.0001890686,0.0001963893,0.0001211978,0.0002544408,0.0003447784,0.0004119627,0.0005592608,0.0002114295],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002592359,"about_ca_system_score_gemma":0.0001985648,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001375715,"about_ca_topic_score_gemma":0.001423508,"domain_scores_codex":[0.9997279,0.00003281852,0.00002174922,0.00008983895,0.000037918,0.0000898524],"domain_scores_gemma":[0.9995785,0.00004944526,0.0001578243,0.00004571422,0.00005587925,0.0001126176],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002306363,0.000035603,0.01271876,0.00002114296,0.000008373675,0.00004165061,0.00003577235,0.00009472085,0.984728,0.000070037,0.00004782558,0.001967498],"study_design_scores_gemma":[0.00002420983,0.001549305,0.4770879,0.00002904427,0.00004359695,0.0009314289,0.0003571864,0.002818397,0.5148336,0.0003082145,0.001982189,0.00003495464],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964778,0.0002320466,0.002398935,0.00003900803,0.000004656616,0.00001504994,0.0002379428,0.00006271646,0.0005318966],"genre_scores_gemma":[0.9976811,0.00007644555,0.001627666,0.00003966639,0.000003636056,0.00001587048,0.0002588037,0.00001927015,0.000277307],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001375715,"threshold_uncertainty_score":0.002833247,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005909849005387527,"score_gpt":0.232983751351527,"score_spread":0.2270739023461395,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}