{"id":"W4297850247","doi":"10.3390/zoonoticdis2030014","title":"Tracking Co-Occurrence of N501Y, P681R, and Other Key Mutations in SARS-CoV-2 Spike for Surveillance","year":2022,"lang":"en","type":"article","venue":"Zoonotic Diseases","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Health and Medical Research Council; U.S. Food and Drug Administration; Medical Research Council; Department of Industry, Science, Energy and Resources, Australian Government; Australian e-Health Research Centre; Australian Academy of Science; Commonwealth Scientific and Industrial Research Organisation; York University","keywords":"Lineage (genetic); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Spike (software development); Mutation; In silico; Coronavirus disease 2019 (COVID-19); 2019-20 coronavirus outbreak; Biology; Genetics; Evolutionary biology; Virology; Medicine; Gene; Outbreak; Computer science; Internal medicine","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007313685,0.0002575338,0.0003101116,0.001527155,0.0002927604,0.0006615546,0.0002839765,0.0003854177,0.0008080578],"category_scores_gemma":[0.001170071,0.0001241376,0.0002930855,0.001152274,0.0001298657,0.0004173625,0.00047045,0.0003957421,0.0004855322],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004521438,"about_ca_system_score_gemma":0.0004162413,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01238076,"about_ca_topic_score_gemma":0.02446692,"domain_scores_codex":[0.9994591,0.00008798535,0.00002914052,0.0001653999,0.0001448572,0.0001134675],"domain_scores_gemma":[0.9988637,0.0001109639,0.0004149087,0.00006501514,0.0003667823,0.0001786881],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00008912418,0.00002615343,0.9879357,0.0000229686,0.00004391553,0.0002312973,0.0002042006,0.0003448587,0.003776106,0.00007580509,0.001529427,0.005720472],"study_design_scores_gemma":[0.000006877871,0.00007448787,0.9889475,0.00002917131,0.00003199669,0.0005095575,0.0008564382,0.003802204,0.001761278,0.0001055692,0.003860478,0.00001425953],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942291,0.0003563397,0.0006829323,0.0001007037,0.00001936187,0.00001929885,0.003395277,0.00004481635,0.001152285],"genre_scores_gemma":[0.9894616,0.0002409998,0.001941013,0.00008382999,0.00001952398,0.00001635617,0.007719393,0.00002197043,0.0004952412],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01238076,"threshold_uncertainty_score":0.02461743,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06594305272035268,"score_gpt":0.3753714620447628,"score_spread":0.3094284093244101,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}