{"id":"W4298121475","doi":"10.21203/rs.3.rs-2086397/v1","title":"Phenotypic characterization of single CD4+ T cells harboring genetically intact and inducible HIV genomes","year":2022,"lang":"en","type":"preprint","venue":"Research Square","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":false,"ca_institutions":"Centre Hospitalier de l’Université de Montréal; McGill University Health Centre; Université de Montréal","funders":"","keywords":"Phenotype; Genome; Biology; Human immunodeficiency virus (HIV); Genetically engineered; Genetics; Virology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009711771,0.0002524589,0.0004573952,0.0006044965,0.000348681,0.00007122163,0.00044945,0.000362949,0.003473598],"category_scores_gemma":[0.0001283969,0.0002388222,0.0001038604,0.0002951619,0.0003763867,0.00005837226,0.002226935,0.001569191,0.0003327281],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002821714,"about_ca_system_score_gemma":0.000474613,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001538023,"about_ca_topic_score_gemma":0.00001174876,"domain_scores_codex":[0.9967648,0.001075498,0.0003867033,0.0007171601,0.0002837622,0.0007720492],"domain_scores_gemma":[0.9984798,0.0003007723,0.0001241571,0.0006958584,0.0003012548,0.00009815815],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002162488,0.0005412801,0.008508409,0.0006416111,0.0003076484,0.00002936733,0.0008426913,0.00001447976,0.97551,0.00020669,0.0002315772,0.01294998],"study_design_scores_gemma":[0.002172628,0.002143415,0.1232191,0.0005123162,0.00007608603,0.00001439089,0.0007917105,0.00002747765,0.7997769,0.0005519529,0.07011114,0.0006028969],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9894999,0.005865689,0.0000681609,0.0003167229,0.0002491342,0.001187017,0.00129043,0.00004495815,0.001478038],"genre_scores_gemma":[0.9910687,0.002755135,0.0001352311,0.000008218945,0.00006042479,0.000301777,0.002880245,0.00004460358,0.002745643],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1757332,"threshold_uncertainty_score":0.9974374,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.050653678841064,"score_gpt":0.3272586857518791,"score_spread":0.2766050069108151,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}