{"id":"W4299144748","doi":"10.17615/ybpp-h534","title":"Highly Recombinant VGII Cryptococcus gattii Population Develops Clonal Outbreak Clusters through both Sexual Macroevolution and Asexual Microevolution","year":2020,"lang":"en","type":"article","venue":"UNC Libraries","topic":"Yeasts and Rust Fungi Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Health and Medical Research Council; Medical Research Council; Canadian Institutes of Health Research; Centers for Disease Control and Prevention; National Science Foundation; National Institutes of Health; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Microevolution; Biology; Population; Cryptococcus gattii; Outbreak; Macroevolution; Evolutionary biology; Genetics; Virology; Cryptococcus; Phylogenetics; Gene; Medicine","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001136967,0.0001721188,0.0001442762,0.0003688503,0.0003504967,0.0003990586,0.0001805324,0.0001811293,0.000472603],"category_scores_gemma":[0.0001754537,0.0001014557,0.0001614241,0.0003525035,0.0001690056,0.0001156535,0.0003045062,0.0003252011,0.0001106486],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003120563,"about_ca_system_score_gemma":0.0001747926,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003120014,"about_ca_topic_score_gemma":0.004243179,"domain_scores_codex":[0.999892,0.000007961086,0.000007796204,0.00003775127,0.0000232717,0.00003126615],"domain_scores_gemma":[0.9998838,0.00001428316,0.00003272361,0.00001823106,0.00001986852,0.000031053],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001856249,0.00005235717,0.08205955,0.00003636008,0.00002821068,0.0005409363,0.0002950923,0.0001822097,0.9073026,0.000128665,0.0001202197,0.009068323],"study_design_scores_gemma":[0.00002259515,0.0003362981,0.8778816,0.0000252467,0.0000602546,0.003755265,0.001061678,0.002781513,0.1103767,0.0002239744,0.003451767,0.00002299014],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991672,0.0000432694,0.0002517707,0.000007082118,0.000001242894,0.000008753425,0.00009081776,0.000008139265,0.0004218144],"genre_scores_gemma":[0.9985061,0.00004438616,0.0005760151,0.0000201255,0.000001745023,0.000008199119,0.0004252601,0.000005919837,0.0004121625],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003120014,"threshold_uncertainty_score":0.006203711,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0160598847198235,"score_gpt":0.2246487677787259,"score_spread":0.2085888830589024,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}