{"id":"W4299144748","doi":"10.17615/ybpp-h534","title":"Highly Recombinant VGII Cryptococcus gattii Population Develops Clonal Outbreak Clusters through both Sexual Macroevolution and Asexual Microevolution","year":2020,"lang":"en","type":"article","venue":"UNC Libraries","topic":"Yeasts and Rust Fungi Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Health and Medical Research Council; Medical Research Council; Canadian Institutes of Health Research; Centers for Disease Control and Prevention; National Science Foundation; National Institutes of Health; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Microevolution; Biology; Population; Cryptococcus gattii; Outbreak; Macroevolution; Evolutionary biology; Genetics; Virology; Cryptococcus; Phylogenetics; Gene; Medicine","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006621969,0.0002510909,0.0002218019,0.00002862341,0.0003267973,0.00008986983,0.000120231,0.0001826566,0.00002599269],"category_scores_gemma":[0.00007506367,0.0002208802,0.0000470398,0.000118914,0.0001770168,0.00005134489,0.0003075949,0.0001147346,0.00001691866],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002188706,"about_ca_system_score_gemma":0.00008727215,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001186521,"about_ca_topic_score_gemma":0.00005226171,"domain_scores_codex":[0.9986776,0.00006769704,0.0002910627,0.0004968149,0.0001505057,0.000316391],"domain_scores_gemma":[0.9995531,0.00001772369,0.0001169183,0.0001560388,0.00005055279,0.0001057013],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002702096,0.0003697627,0.2596826,0.0006055361,0.0007264361,0.00003620909,0.006057073,0.0002640529,0.3393293,0.1120583,0.263956,0.01421254],"study_design_scores_gemma":[0.006292114,0.003652553,0.4493434,0.0001242544,0.0002946827,0.0001139668,0.004528555,0.001335358,0.05361298,0.01893319,0.459024,0.00274498],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9773325,0.004400386,0.009371001,0.006570686,0.0007564019,0.0005210739,0.0001151405,0.0001144912,0.0008182764],"genre_scores_gemma":[0.9841278,0.00009775398,0.01204553,0.001332643,0.0005797655,0.00002596004,0.0008707112,0.00003719787,0.0008825904],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2857163,"threshold_uncertainty_score":0.9007234,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0160598847198235,"score_gpt":0.2246487677787259,"score_spread":0.2085888830589024,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}