{"id":"W4299933975","doi":"10.17615/thcx-v290","title":"Genome-Wide Identification of Francisella tularensis Virulence Determinants","year":2020,"lang":"en","type":"article","venue":"UNC Libraries","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"U.S. Food and Drug Administration; Turun Yliopisto; National Institutes of Health; Umeå Universitet; University of Victoria; University of Rochester","keywords":"Francisella tularensis; Virulence; Identification (biology); Genome; Biology; Tularemia; Francisella; Virology; Microbiology; Computational biology; Genetics; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009595291,0.0001096488,0.000158416,0.00002509924,0.00006284446,0.00005283864,0.00027109,0.0001047894,0.00008759563],"category_scores_gemma":[0.0003216267,0.0001034117,0.00007184949,0.0001371529,0.00016347,0.00001458064,0.0001472994,0.00005705405,0.00003749766],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000002721884,"about_ca_system_score_gemma":0.00008224246,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005916235,"about_ca_topic_score_gemma":0.000002658191,"domain_scores_codex":[0.9990509,0.00004093022,0.000279037,0.0002839633,0.0001597901,0.0001854286],"domain_scores_gemma":[0.9994133,0.00001988147,0.00009693816,0.0002695989,0.00009310506,0.0001071976],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001446669,0.00001733676,0.008682831,0.00006095611,0.00001800023,0.00000237305,0.0001925212,0.000006736037,0.9879716,0.0003179659,0.0003049592,0.002280022],"study_design_scores_gemma":[0.0002102833,0.0001342416,0.02157876,0.00000557487,0.000007792585,9.024031e-7,0.00004110844,0.00007066629,0.9648035,0.0006979376,0.01232625,0.0001229927],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9926514,0.001014215,0.005286706,0.0002812569,0.00009731839,0.0001443498,0.00006100881,0.00001405787,0.0004496883],"genre_scores_gemma":[0.9982398,0.00009700672,0.0009197363,0.000274413,0.0001749164,0.000008084464,0.00006793704,0.00001841996,0.0001996954],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02316814,"threshold_uncertainty_score":0.4217005,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01727326631689901,"score_gpt":0.2343096188145241,"score_spread":0.2170363524976251,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}