{"id":"W4300020644","doi":"10.26443/msurj.v5i1.67","title":"Genomic and Phenotypic Variability of Mycobaterium avium Subspecies","year":2010,"lang":"en","type":"article","venue":"McGill Science Undergraduate Research Journal","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"","keywords":"Subspecies; Biology; Mycobacterium avium subspecies paratuberculosis; Phenotype; Mycobacterium; Genotype; Gene; Genetics; Microbiology; Genome; Paratuberculosis; Bacteria; Zoology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":["sts"],"category_scores_codex":[0.01208763,0.0001674538,0.000353983,0.0008744723,0.001303131,0.0002550614,0.0005812969,0.00009458564,0.0003481559],"category_scores_gemma":[0.005005582,0.0001236011,0.00009493304,0.001371444,0.003704967,0.0005109693,0.0004760031,0.001680442,0.00004396727],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002461987,"about_ca_system_score_gemma":0.001093166,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001301649,"about_ca_topic_score_gemma":0.00004439125,"domain_scores_codex":[0.9952159,0.0003121968,0.0004607669,0.0005066056,0.002278063,0.001226465],"domain_scores_gemma":[0.9955716,0.0006013138,0.0001164746,0.0005609047,0.001803831,0.001345842],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001875718,0.0002077063,0.1120849,0.00008298035,0.00001978472,0.00005706403,0.00005717435,6.406027e-7,0.8711433,0.01176679,0.0004484897,0.003943586],"study_design_scores_gemma":[0.001496563,0.001071911,0.820226,0.0001038168,0.00002754464,0.001512257,0.0002143714,0.0002747485,0.1247875,0.04090159,0.009147739,0.0002359961],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9811333,0.00005711931,0.00003805862,0.009784096,0.0003336003,0.0003306772,0.00002283557,0.0000191518,0.008281209],"genre_scores_gemma":[0.9967429,0.0008903446,0.001771647,0.00005915062,0.0002473754,0.00001034814,0.000001674151,0.00001663632,0.0002599191],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7463558,"threshold_uncertainty_score":0.999997,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04417513617430172,"score_gpt":0.355996213658812,"score_spread":0.3118210774845103,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}