{"id":"W4303201720","doi":"10.7717/peerj.14144","title":"Genomic differences between sequence types 1 and 104 of <i>Streptococcus suis</i> Serotype 2","year":2022,"lang":"en","type":"article","venue":"PeerJ","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Japan Society for the Promotion of Science","keywords":"Streptococcus suis; Serotype; Biology; Microbiology; Genetics; Sequence (biology); Multilocus sequence typing; Computational biology; Gene; Genotype; Virulence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001746929,0.0004013651,0.0003600276,0.001137497,0.0002148302,0.0005296632,0.0001622745,0.00040243,0.001361072],"category_scores_gemma":[0.00061495,0.000135404,0.0006131349,0.0009384722,0.0002050167,0.0001377069,0.0002677323,0.0002694843,0.0002992769],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001843364,"about_ca_system_score_gemma":0.0002115309,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001375786,"about_ca_topic_score_gemma":0.00153922,"domain_scores_codex":[0.9996374,0.00005297477,0.00004076295,0.0001015854,0.00008530729,0.00008194155],"domain_scores_gemma":[0.9996318,0.00009460802,0.0001498928,0.00002312401,0.00004330913,0.00005727539],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00145842,0.0001654298,0.108536,0.000259757,0.0001624642,0.0007413109,0.0005926253,0.0003883621,0.8756794,0.0001772514,0.0002838814,0.01155513],"study_design_scores_gemma":[0.00002733591,0.001059472,0.9372758,0.00004585432,0.0002624308,0.002529048,0.0007139933,0.0007574211,0.05323754,0.00009827951,0.003968904,0.00002394914],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969764,0.000231895,0.0004291816,0.00001913544,0.000011835,0.00002072754,0.001776041,0.00001462494,0.0005200958],"genre_scores_gemma":[0.9869647,0.0002131162,0.002149798,0.00006838421,0.00001934015,0.00004974094,0.01000792,0.00001848801,0.0005085992],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001375786,"threshold_uncertainty_score":0.004553258,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05011978156666072,"score_gpt":0.3035572554503383,"score_spread":0.2534374738836775,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}