{"id":"W4303685210","doi":"10.1093/database/baac086","title":"HSDatabase—a database of highly similar duplicate genes from plants, animals, and algae","year":2022,"lang":"en","type":"article","venue":"Database","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University; Dalhousie University","funders":"","keywords":"Algae; Gene; Database; Biology; Computational biology; Computer science; Botany; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001224467,0.002297389,0.002724583,0.009270991,0.002168076,0.002482823,0.002815014,0.001720489,0.0184773],"category_scores_gemma":[0.003540281,0.001243574,0.001359866,0.01234898,0.0005470359,0.002928047,0.002696633,0.001928553,0.02604697],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001079172,"about_ca_system_score_gemma":0.004070728,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003985299,"about_ca_topic_score_gemma":0.004226072,"domain_scores_codex":[0.9989643,0.00007719544,0.000264209,0.0003211061,0.0002773678,0.00009582294],"domain_scores_gemma":[0.9984517,0.0002530745,0.0003828642,0.0002470008,0.0003941668,0.0002711416],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003864487,0.0004314221,0.01609286,0.02480276,0.0007671251,0.002595404,0.002189375,0.002243703,0.1508184,0.007364376,0.6187621,0.1700679],"study_design_scores_gemma":[0.0002602913,0.0002148628,0.01608443,0.0007549932,0.0003231643,0.001746642,0.0003518177,0.001448036,0.01556115,0.003019838,0.9600403,0.0001945679],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.01602245,0.006017284,0.01115207,0.0001689397,0.0003696177,0.0002498203,0.9437453,0.01488843,0.007386085],"genre_scores_gemma":[0.004623722,0.001292197,0.01530168,0.00007508774,0.00003515411,0.0001593825,0.9765303,0.0009199808,0.001062459],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.0184773,"threshold_uncertainty_score":0.0618127,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01641954970793938,"score_gpt":0.2325729196994683,"score_spread":0.2161533699915289,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}