{"id":"W4303685210","doi":"10.1093/database/baac086","title":"HSDatabase—a database of highly similar duplicate genes from plants, animals, and algae","year":2022,"lang":"en","type":"article","venue":"Database","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University; Dalhousie University","funders":"","keywords":"Algae; Gene; Database; Biology; Computational biology; Computer science; Botany; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002170619,0.0002006328,0.0002240454,0.00004873612,0.0002053477,0.00001115557,0.0003135752,0.00003476032,0.00008881246],"category_scores_gemma":[0.00003268643,0.0002076748,0.0000513394,0.00006871591,0.0001063469,0.000002195619,0.001544097,0.00009813955,0.000004366057],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000074309,"about_ca_system_score_gemma":0.00005203515,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004981041,"about_ca_topic_score_gemma":0.00007813341,"domain_scores_codex":[0.9986688,0.00007823839,0.0002650382,0.0005706556,0.0001730553,0.0002441822],"domain_scores_gemma":[0.9988772,0.00003655391,0.0001287274,0.0008227965,0.00003294654,0.0001017355],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001932302,0.00008599483,0.004263615,0.00002644,0.0001150113,0.00001790047,0.00003712732,0.00002518627,0.9821112,0.0001387913,0.01176837,0.001217142],"study_design_scores_gemma":[0.00118559,0.0002988667,0.008930026,0.00001403711,0.00008782442,0.00002944206,0.0003842784,0.0001681775,0.4665656,0.00006615779,0.5218265,0.0004435398],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9139293,0.02218093,0.0001956643,0.0001629219,0.000129168,0.0001818572,0.06313109,0.000005523756,0.00008349678],"genre_scores_gemma":[0.973786,0.006242081,0.003540708,0.0004336769,0.0001649638,0.00006464803,0.01568004,0.00003328223,0.00005457884],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5155456,"threshold_uncertainty_score":0.8468731,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01641954970793938,"score_gpt":0.2325729196994683,"score_spread":0.2161533699915289,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}