{"id":"W4303685786","doi":"10.1093/femsle/fnac098","title":"Inflammatory bowel disease-associated adherent-invasive <i>Escherichia coli</i> have elevated host-defense peptide resistance","year":2022,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"Toronto Metropolitan University","funders":"Faculty of Science, Chiang Mai University; Natural Sciences and Engineering Research Council of Canada","keywords":"Microbiology; Protease; Biology; Escherichia coli; Inflammatory bowel disease; Antibiotic resistance; Ulcerative colitis; Antibiotics; Antimicrobial; Antimicrobial peptides; Pathogenesis; Immunology; Gene; Disease; Medicine; Enzyme; Pathology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003883694,0.0006134697,0.0006612858,0.0002175024,0.001296936,0.00004289999,0.0007154547,0.0003042689,0.001551694],"category_scores_gemma":[0.0001427832,0.0006569079,0.0003951001,0.0002310029,0.000955505,0.0001610511,0.000533634,0.001244103,0.0005289849],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004071664,"about_ca_system_score_gemma":0.0002555333,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000130722,"about_ca_topic_score_gemma":0.0003204329,"domain_scores_codex":[0.9959784,0.001069305,0.000688748,0.0009379628,0.00006050465,0.001265081],"domain_scores_gemma":[0.9982605,0.0003503659,0.0005867844,0.0006114964,0.00009804805,0.00009281347],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0007389343,0.0001863347,0.009262852,0.00002776168,0.0004512614,0.0001372241,0.0004872743,0.00006997027,0.7519758,0.00008154576,0.2365704,0.00001056716],"study_design_scores_gemma":[0.008928684,0.0005764989,0.04053761,0.0002667841,0.00053619,0.0002184597,0.003447046,0.000004379193,0.390905,0.0001131777,0.5513306,0.00313557],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9901431,0.001484112,0.00003723049,0.00324191,0.001611349,0.0007440472,0.002037936,0.0003410924,0.0003592863],"genre_scores_gemma":[0.9689362,0.00008223837,0.00007472631,0.01394676,0.0000812031,0.000217492,0.002751107,0.0001031685,0.01380708],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3610709,"threshold_uncertainty_score":0.9995882,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007846797934347378,"score_gpt":0.1930178336937465,"score_spread":0.1851710357593992,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}