{"id":"W4304084152","doi":"10.1038/s41587-022-01475-z","title":"A proteome-scale map of the SARS-CoV-2–human contactome","year":2022,"lang":"en","type":"article","venue":"Nature Biotechnology","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":68,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research; Sinai Health System; Lunenfeld-Tanenbaum Research Institute; Muscular Dystrophy Canada; University of Toronto","funders":"Michigan Technology Tri-Corridor; Canadian Institutes of Health Research; Université de Paris; Wallonie-Bruxelles International; Technische Universität München; Centre National de la Recherche Scientifique; Institució Catalana de Recerca i Estudis Avançats; University of Toronto; Helmholtz Zentrum München; Bundesministerium für Bildung und Forschung; Belgian American Educational Foundation; Canada Excellence Research Chairs, Government of Canada; Agence Nationale de la Recherche; Université de Liège; European Commission; Fonds De La Recherche Scientifique - FNRS; Institute for Research in Biomedicine; Aix-Marseille Université; Canadian Institute for Advanced Research; Institut National de la Santé et de la Recherche Médicale; Roswell Park Cancer Institute","keywords":"Biology; Proteome; Virus; Computational biology; Host (biology); Viral replication; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Virology; Coronavirus; Gene; Disease; Genetics; Infectious disease (medical specialty); Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007990774,0.0002220434,0.0001890642,0.0008553928,0.0003543021,0.0002786155,0.0001154827,0.0001948807,0.002133172],"category_scores_gemma":[0.0001597298,0.00009640346,0.0003138345,0.001073859,0.000107547,0.0003002177,0.0004444853,0.000262533,0.0004851168],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000200115,"about_ca_system_score_gemma":0.0002763396,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001109705,"about_ca_topic_score_gemma":0.002196987,"domain_scores_codex":[0.999934,0.000006120659,0.000002811434,0.00002910384,0.00001520798,0.00001270391],"domain_scores_gemma":[0.9999211,0.0000116877,0.00002228833,0.000008413704,0.00001428329,0.00002222804],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005297931,0.00005760233,0.01882353,0.0004561706,0.0001666456,0.0005100287,0.000250331,0.0009822443,0.9535719,0.0009977276,0.002460774,0.02119326],"study_design_scores_gemma":[0.00005221258,0.0004192063,0.7552951,0.0001294169,0.0003011738,0.003491698,0.0008653939,0.01676205,0.1460538,0.005342101,0.0712256,0.00006218535],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9576616,0.003112534,0.01371353,0.0003414715,0.00002505873,0.00004968784,0.02088984,0.0002881022,0.003918113],"genre_scores_gemma":[0.9379402,0.002448526,0.01960703,0.0001359792,0.00004100113,0.00008995675,0.03705226,0.00007445326,0.002610517],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002133172,"threshold_uncertainty_score":0.007136106,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01990606679585619,"score_gpt":0.3329122605740626,"score_spread":0.3130061937782065,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}