{"id":"W4304123667","doi":"10.1038/s41531-022-00395-8","title":"Fecal microbiome alterations in treatment-naive de novo Parkinson’s disease","year":2022,"lang":"en","type":"article","venue":"npj Parkinson s Disease","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Turun Yliopistosäätiö; Päivikki ja Sakari Sohlbergin Säätiö; Academy of Finland; Turun Yliopistollinen Keskussairaala; Alkoholitutkimussäätiö; Parkinsonfonden; Weston Brain Institute; Suomen Kulttuurirahasto; Suomen Lääketieteen Säätiö; Varsinais-Suomen Rahasto; Helsingin Yliopisto","keywords":"Lachnospiraceae; Microbiome; Confounding; Parkinson's disease; Feces; Gut flora; Biology; Disease; Dopaminergic; Internal medicine; Physiology; Medicine; Immunology; Bioinformatics; Genetics; Ecology; Dopamine; Bacteria; Firmicutes","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002882006,0.0002997395,0.000500792,0.0005474261,0.0004250833,0.000630576,0.0001311142,0.000415782,0.001096208],"category_scores_gemma":[0.0009380946,0.0002501419,0.0003117887,0.0003536348,0.0002917637,0.000252993,0.000416036,0.0002469417,0.000132299],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003323374,"about_ca_system_score_gemma":0.000157898,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002527509,"about_ca_topic_score_gemma":0.00402065,"domain_scores_codex":[0.9997147,0.00006089612,0.000030699,0.0001207198,0.00004402107,0.00002901225],"domain_scores_gemma":[0.9996662,0.00005636985,0.0001428644,0.00003845076,0.00004714222,0.0000489331],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00388572,0.0001823478,0.9464873,0.0001688476,0.0004591836,0.0008707519,0.0005599005,0.0001151849,0.03084669,0.00004988674,0.0002664936,0.01610768],"study_design_scores_gemma":[0.00001565657,0.000340381,0.9975951,0.00001278021,0.000077783,0.0006347131,0.0001201607,0.00008560055,0.0007625035,0.00003679798,0.0003143612,0.000004308124],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989293,0.0005245095,0.0001206912,0.00001312851,0.000006374713,0.000007037624,0.00022982,0.000003311497,0.0001657143],"genre_scores_gemma":[0.9989391,0.0002361837,0.0001913971,0.00003026841,0.000004804473,0.00000747192,0.0003674712,0.000003191465,0.0002202377],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002527509,"threshold_uncertainty_score":0.005025625,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01348051459282481,"score_gpt":0.2729711986698511,"score_spread":0.2594906840770264,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}