{"id":"W4304588764","doi":"10.1182/blood.2022016095","title":"Minimal information for reporting a genomics experiment","year":2022,"lang":"en","type":"article","venue":"Blood","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"National Cancer Institute; European Bioinformatics Institute","keywords":"Exome; Genomics; Exome sequencing; Biology; Computational biology; Identification (biology); Genome; Data quality; Genetics; Bioinformatics; Gene; Mutation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["metaresearch"],"consensus_categories":["metaresearch"],"category_scores_codex":[0.2062639,0.002884957,0.003209773,0.00689202,0.003505475,0.009567388,0.00630061,0.008735382,0.02684677],"category_scores_gemma":[0.402569,0.003082417,0.002321513,0.004119326,0.003823958,0.008309379,0.008481814,0.009401809,0.0220583],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003404293,"about_ca_system_score_gemma":0.01424396,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001334709,"about_ca_topic_score_gemma":0.00119966,"domain_scores_codex":[0.7168137,0.1726696,0.06258798,0.01055523,0.03384418,0.003529286],"domain_scores_gemma":[0.355878,0.3138182,0.03896347,0.2022827,0.08201363,0.007043971],"domain_codex":null,"domain_gemma":"reporting","domain_candidate":"reporting","domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.005333458,0.0007520032,0.008889073,0.008077897,0.0005561967,0.002021891,0.002790967,0.004637685,0.03192767,0.2080494,0.3113633,0.4156006],"study_design_scores_gemma":[0.00113028,0.001535948,0.006445611,0.005085041,0.0005714376,0.002115082,0.0007663317,0.008789946,0.0490378,0.1515556,0.7723942,0.0005726042],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.007106891,0.002491076,0.8677393,0.02731602,0.005422563,0.0115555,0.02732785,0.01723006,0.03381074],"genre_scores_gemma":[0.04922334,0.002052834,0.8655011,0.009708758,0.003754733,0.0297223,0.03023699,0.002484038,0.007315919],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.7937361,"threshold_uncertainty_score":0.9788179,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01241322730026283,"score_gpt":0.2513145370761665,"score_spread":0.2389013097759037,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}