{"id":"W4304588764","doi":"10.1182/blood.2022016095","title":"Minimal information for reporting a genomics experiment","year":2022,"lang":"en","type":"article","venue":"Blood","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"National Cancer Institute; European Bioinformatics Institute","keywords":"Exome; Genomics; Exome sequencing; Biology; Computational biology; Identification (biology); Genome; Data quality; Genetics; Bioinformatics; Gene; Mutation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001602836,0.00005322245,0.00005883175,0.00001739611,0.0001246915,0.00001836889,0.00007340478,0.00002204753,0.00001313142],"category_scores_gemma":[0.0001346382,0.00006315322,0.00005726938,0.00002167521,0.000007596534,0.000001830289,0.0001354552,0.000026856,0.000001115707],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001885781,"about_ca_system_score_gemma":0.00009937845,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008929267,"about_ca_topic_score_gemma":0.000002433816,"domain_scores_codex":[0.9994319,0.000005768954,0.0002934262,0.0001019524,0.00005416696,0.0001127734],"domain_scores_gemma":[0.9995301,0.000006932469,0.0002614335,0.0001435698,0.00003007838,0.00002789038],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001840426,0.0003021024,0.001897029,0.00002738966,0.00009941928,0.000003748698,0.0006247784,0.001190829,0.9806895,0.0006196408,0.01066377,0.003697695],"study_design_scores_gemma":[0.001225894,0.0004760199,0.0002633193,9.043142e-7,0.00002474387,0.00003362506,0.0004660158,0.0001101476,0.4062278,0.00007093265,0.5909692,0.0001314139],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971403,0.0004038156,0.0009047553,0.00006820892,0.0001711545,0.0002217055,0.00009226612,0.000005989326,0.0009918192],"genre_scores_gemma":[0.9958749,0.00002781116,0.00277741,0.0003788403,0.0001939997,0.0002744164,0.0003660487,0.000009520207,0.00009705401],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5803055,"threshold_uncertainty_score":0.2575313,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01241322730026283,"score_gpt":0.2513145370761665,"score_spread":0.2389013097759037,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}