{"id":"W4304761866","doi":"10.3390/cells11203203","title":"Analysis of the Compositional Features and Codon Usage Pattern of Genes Involved in Human Autophagy","year":2022,"lang":"en","type":"article","venue":"Cells","topic":"Autophagy in Disease and Therapy","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université du Québec à Trois-Rivières","funders":"King Saud University","keywords":"Gene; Autophagy; Biology; Codon usage bias; Genome; Genetics; Human genome; GC-content; Start codon; Computational biology; Nucleotide","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008775214,0.00005200901,0.0002028289,0.0001210226,0.00004995905,0.000001969028,0.0000729688,0.00001918763,0.0005114882],"category_scores_gemma":[0.000001192293,0.00003923631,0.00009688549,0.0002726664,0.00007025895,0.00001032164,0.00005878525,0.00007683953,1.879849e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001756302,"about_ca_system_score_gemma":0.00002148325,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001478375,"about_ca_topic_score_gemma":0.00002957575,"domain_scores_codex":[0.9994553,0.00006930114,0.0001452923,0.00009528807,0.0001734154,0.00006138082],"domain_scores_gemma":[0.999688,0.00003477596,0.000076982,0.0001599671,0.0000167738,0.0000234639],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006245205,0.0003181692,0.2246755,0.00005543703,0.0004798067,0.0000159741,0.0008214902,0.000488562,0.7719843,0.0001129099,0.0002331662,0.000752219],"study_design_scores_gemma":[0.0005699365,0.00006348923,0.7230678,0.00001143879,0.0002858947,0.000001216792,0.0001352614,0.0003501828,0.2753195,0.00006506,0.000097631,0.00003269157],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981431,0.00136347,0.000009987541,0.00006914462,0.00003468179,0.0001105741,0.00007675575,0.000004057204,0.000188279],"genre_scores_gemma":[0.9993342,0.00002327343,0.000009961866,0.0003457428,0.00001271087,0.000007389041,0.00005318662,0.000004681971,0.0002088933],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4983922,"threshold_uncertainty_score":0.5600437,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01225180081508978,"score_gpt":0.2648347048223579,"score_spread":0.2525829040072681,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}