{"id":"W4304775599","doi":"10.3390/v14102241","title":"Ampliseq for Illumina Technology Enables Detailed Molecular Epidemiology of Rabies Lyssaviruses from Infected Formalin-Fixed Paraffin-Embedded Tissues","year":2022,"lang":"en","type":"article","venue":"Viruses","topic":"Rabies epidemiology and control","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"Canadian Food Inspection Agency","keywords":"Amplicon; Rabies virus; Rabies; Biology; Multiplex; Genome; Massive parallel sequencing; Primer (cosmetics); DNA sequencing; Virology; Lyssavirus; Computational biology; Shotgun sequencing; Ion semiconductor sequencing; Polymerase chain reaction; Genetics; Rhabdoviridae; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001179782,0.0004789523,0.001695433,0.000500287,0.0006427561,0.00000473637,0.0008543074,0.0007048301,0.001165603],"category_scores_gemma":[0.003919476,0.000446259,0.0003716998,0.0004207953,0.001252311,0.0001561443,0.0004782803,0.0006166726,0.0001114194],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006537219,"about_ca_system_score_gemma":0.000137758,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005261595,"about_ca_topic_score_gemma":0.0001279273,"domain_scores_codex":[0.9952016,0.00166936,0.00132572,0.0007713942,0.00005739702,0.0009745181],"domain_scores_gemma":[0.9934038,0.00468068,0.0008526625,0.0008368539,0.0001806566,0.00004534076],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002416369,0.0004333549,0.1298485,0.00005706186,0.001737678,0.0000167833,0.0004457448,0.001011416,0.7833001,0.07141242,0.005507831,0.003812723],"study_design_scores_gemma":[0.006141937,0.001816943,0.007133643,0.0000488747,0.0005640187,0.00007338873,0.001738778,0.0001126382,0.6655923,0.08197138,0.2338649,0.0009412635],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9549128,0.03021556,0.00997221,0.001473051,0.0007595083,0.001045495,0.001097574,0.0004252676,0.00009858424],"genre_scores_gemma":[0.9927931,0.00022506,0.001605603,0.003011267,0.00004880575,0.001371384,0.0006161754,0.00005702901,0.0002715467],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.228357,"threshold_uncertainty_score":0.9997989,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03456824231128443,"score_gpt":0.2976384653735368,"score_spread":0.2630702230622524,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}