{"id":"W4304775599","doi":"10.3390/v14102241","title":"Ampliseq for Illumina Technology Enables Detailed Molecular Epidemiology of Rabies Lyssaviruses from Infected Formalin-Fixed Paraffin-Embedded Tissues","year":2022,"lang":"en","type":"article","venue":"Viruses","topic":"Rabies epidemiology and control","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"Canadian Food Inspection Agency","keywords":"Amplicon; Rabies virus; Rabies; Biology; Multiplex; Genome; Massive parallel sequencing; Primer (cosmetics); DNA sequencing; Virology; Lyssavirus; Computational biology; Shotgun sequencing; Ion semiconductor sequencing; Polymerase chain reaction; Genetics; Rhabdoviridae; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00119921,0.001409682,0.0007017352,0.001217198,0.0009414703,0.001021533,0.0006528539,0.0006348182,0.009198212],"category_scores_gemma":[0.001204179,0.000632179,0.0007264813,0.0008853683,0.0005025108,0.000540636,0.0009022738,0.001274041,0.0060469],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004119093,"about_ca_system_score_gemma":0.0007774738,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009050847,"about_ca_topic_score_gemma":0.004010566,"domain_scores_codex":[0.9985316,0.0002474783,0.00008330067,0.0005545929,0.0004336992,0.0001494266],"domain_scores_gemma":[0.9994736,0.0001728578,0.00008636492,0.0000942027,0.0001290169,0.00004385807],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001672079,0.00004199564,0.0007707304,0.0003929402,0.0000545666,0.000105934,0.0002419164,0.000444459,0.9592551,0.001397161,0.002942402,0.03418563],"study_design_scores_gemma":[0.00007315489,0.0004894827,0.01585452,0.0001409288,0.0001469719,0.0008012921,0.0001304779,0.008705306,0.7411711,0.003076745,0.2293109,0.00009922816],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.1264673,0.002804047,0.7949202,0.0004766606,0.0003275374,0.001453938,0.03127692,0.008365515,0.03390779],"genre_scores_gemma":[0.1034428,0.002649264,0.7875606,0.0008086722,0.0001390135,0.003533609,0.05780696,0.002827708,0.04123135],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.009198212,"threshold_uncertainty_score":0.03077114,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03456824231128443,"score_gpt":0.2976384653735368,"score_spread":0.2630702230622524,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}