{"id":"W4306174581","doi":"10.7554/elife.77943","title":"Early immune markers of clinical, virological, and immunological outcomes in patients with COVID-19: a multi-omics study","year":2022,"lang":"en","type":"article","venue":"eLife","topic":"Long-Term Effects of COVID-19","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"National Center for Advancing Translational Sciences; National Center for Research Resources; National Institute on Drug Abuse; Stanford Bio-X; National Institutes of Health; National Institute of Allergy and Infectious Diseases; Stanford University","keywords":"Immune system; Immunology; Antibody; Viral shedding; Medicine; Disease; Vaccination; Vaccine trial; Clinical trial; Biology; Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001796119,0.0002374796,0.001045118,0.0001794522,0.0001402752,0.00001505775,0.0002688499,0.0001187822,0.0001488539],"category_scores_gemma":[0.005679084,0.0001636186,0.0001294872,0.00025755,0.0003480231,0.00006830626,0.0005461714,0.0006855324,0.000005797095],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001394012,"about_ca_system_score_gemma":0.0002510202,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000385026,"about_ca_topic_score_gemma":0.00001693173,"domain_scores_codex":[0.9968857,0.0007516252,0.0009090275,0.0005064297,0.0006376057,0.0003095671],"domain_scores_gemma":[0.9969242,0.001822446,0.0003415553,0.0005565984,0.0000676139,0.0002876485],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.008566195,0.005487328,0.9843584,0.000049483,0.0002379578,0.0001684876,0.000478029,0.00003987023,0.00004501101,0.00001044281,0.00005892874,0.0004998214],"study_design_scores_gemma":[0.02497649,0.01508382,0.9586664,0.00001389951,0.00009492829,0.000004116149,0.0005565516,0.00006357162,0.00000453026,0.000008144415,0.0003555868,0.0001719201],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959261,0.0001721678,0.00003668348,0.001266318,0.0001328815,0.002342007,0.00003078144,0.00006965469,0.00002344356],"genre_scores_gemma":[0.9948919,0.0000284728,0.0009718705,0.003825778,0.00001397145,0.0001494618,0.00002307857,0.00002462554,0.00007080343],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02569201,"threshold_uncertainty_score":0.6798804,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03450596198793037,"score_gpt":0.3590614836997283,"score_spread":0.3245555217117979,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}