{"id":"W4306247862","doi":"10.1590/0074-02760220118","title":"Characterisation of Neisseria meningitidis cc11/ET-15 variant by whole genome sequencing","year":2022,"lang":"en","type":"article","venue":"Memórias do Instituto Oswaldo Cruz","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Fundação Oswaldo Cruz; University of Oxford; Conselho Nacional de Desenvolvimento Científico e Tecnológico; European Commission; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Wellcome Trust","keywords":"Neisseria meningitidis; Outbreak; Meningococcal disease; Biology; Genome; Virulence; clone (Java method); Genetics; Virology; Gene; Bacteria","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005041927,0.0002458234,0.0004159781,0.0001888212,0.00059969,0.00005336038,0.0002804998,0.0001478023,0.005775913],"category_scores_gemma":[0.00006036922,0.000248304,0.0001277642,0.0003190207,0.00008679291,0.0003367364,0.0002440107,0.0003606435,0.0001909766],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002065006,"about_ca_system_score_gemma":0.0001971604,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000821212,"about_ca_topic_score_gemma":0.00003924513,"domain_scores_codex":[0.9983663,0.0002960255,0.0005512304,0.0003931211,0.00004151083,0.0003517954],"domain_scores_gemma":[0.9991095,0.0000523791,0.0003217046,0.0003979165,0.00008462787,0.00003387271],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001266845,0.0001378128,0.0002870353,0.00002002155,0.0001341457,0.000004253067,0.001197873,0.000112866,0.9926481,0.00260391,0.001787963,0.0009393716],"study_design_scores_gemma":[0.001969602,0.0004582889,0.005518642,0.00002932862,0.0001003704,0.0003931329,0.0008949941,0.00001321089,0.09142531,0.0002046288,0.8985217,0.0004707561],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9926236,0.0008425,0.0003394704,0.0004101036,0.002660848,0.0003568507,0.0006160977,0.0001269453,0.002023626],"genre_scores_gemma":[0.9965819,0.00005031247,0.00008861922,0.0001696239,0.00008703688,0.0001380541,0.001115987,0.00003152591,0.001736914],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9012228,"threshold_uncertainty_score":0.9999969,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01756458109159065,"score_gpt":0.2388950376664545,"score_spread":0.2213304565748639,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}