{"id":"W4306353172","doi":"10.1093/nar/gkac821","title":"TWAS Atlas: a curated knowledgebase of transcriptome-wide association studies","year":2022,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":83,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"China Postdoctoral Science Foundation; Chinese Academy of Sciences; National Natural Science Foundation of China","keywords":"Biology; Transcriptome; Computational biology; Atlas (anatomy); Association (psychology); Bioinformatics; Genetics; Gene; Gene expression; Anatomy","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004837656,0.002730322,0.004329284,0.03082203,0.002842447,0.006753272,0.005975757,0.003182146,0.02421776],"category_scores_gemma":[0.023959,0.001821249,0.00408078,0.02933923,0.0009721873,0.004341892,0.007931714,0.003366658,0.01620359],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002156615,"about_ca_system_score_gemma":0.01304982,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01542026,"about_ca_topic_score_gemma":0.02473445,"domain_scores_codex":[0.9953307,0.0006993671,0.001270451,0.00152012,0.000852956,0.0003264288],"domain_scores_gemma":[0.9851665,0.005518246,0.002289684,0.003227943,0.002503145,0.001294546],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001236067,0.0003014022,0.01747108,0.03967997,0.003913319,0.004064937,0.002783883,0.009777556,0.02831301,0.02797692,0.6760262,0.1884557],"study_design_scores_gemma":[0.0001848019,0.00007797239,0.01086332,0.002782088,0.001777323,0.001024398,0.0004601754,0.004287973,0.005187945,0.0217564,0.9513558,0.0002417176],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"software","genre_scores_codex":[0.003823393,0.006691549,0.06064476,0.0008548975,0.0005063446,0.0004683458,0.8944426,0.0247722,0.007795884],"genre_scores_gemma":[0.008799748,0.005606103,0.07466735,0.0005410716,0.0001396054,0.00101014,0.9049091,0.002637348,0.001689438],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.03082203,"threshold_uncertainty_score":0.08101648,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06383391346614231,"score_gpt":0.37818101180023,"score_spread":0.3143470983340877,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}