{"id":"W4306681446","doi":"10.7717/peerj.14260","title":"Fecal fungal microbiota alterations associated with clinical phenotypes in Crohn’s disease in southwest China","year":2022,"lang":"en","type":"article","venue":"PeerJ","topic":"Inflammatory Bowel Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Natural Science Foundation of China","keywords":"Crohn's disease; Phenotype; Feces; Disease; Fecal bacteriotherapy; Biology; Clinical phenotype; Gut flora; Microbiology; Fungal disease; Medicine; Immunology; Pathology; Clostridium difficile; Genetics; Antibiotics; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003442773,0.0001300041,0.000134487,0.0000576113,0.0001132232,0.00002460513,0.0001707148,0.00005904309,0.0001145143],"category_scores_gemma":[0.0002082673,0.0001329255,0.00007661196,0.0001182779,0.00006984046,0.000004515807,0.0001568794,0.0002327864,0.00001047993],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005806103,"about_ca_system_score_gemma":0.0002805769,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006784177,"about_ca_topic_score_gemma":0.001909223,"domain_scores_codex":[0.9987121,0.0002814034,0.0002737259,0.000351921,0.0001332979,0.000247556],"domain_scores_gemma":[0.9994955,0.00001661648,0.00006999787,0.0002645542,0.00003061982,0.0001226901],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000747728,0.0005215416,0.9921337,0.000007599862,0.00002759517,0.0006989944,0.0001198742,0.002251239,0.002472352,0.00005929222,0.0008637607,0.00009631113],"study_design_scores_gemma":[0.001350877,0.00005983963,0.9972916,0.000008901472,0.00001798794,0.000002304402,0.00003834604,0.0003134457,0.00005605838,0.00002811744,0.0006519366,0.0001805316],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987687,0.00008668162,0.00001739353,0.0002221442,0.0001225127,0.0002415068,0.0003106582,0.00001399332,0.0002163884],"genre_scores_gemma":[0.9982066,0.000003513444,0.00003977387,0.0002839967,0.00009701461,0.00008395893,0.0007266217,0.00002275327,0.0005358097],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005157941,"threshold_uncertainty_score":0.5420547,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009643601873786805,"score_gpt":0.2582855432174885,"score_spread":0.2486419413437017,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}