{"id":"W4306870982","doi":"10.3389/fmicb.2022.994421","title":"Identification of essential genes in Mycobacterium avium subsp. paratuberculosis genome for persistence in dairy calves","year":2022,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre; University of Calgary","funders":"Agriculture Funding Consortium","keywords":"Biology; Transposon mutagenesis; Paratuberculosis; Gene; Genome; Genetics; Transposable element; Mutagenesis; Mutant; Mycobacterium; Microbiology; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000299037,0.0002023763,0.0003305448,0.0004463211,0.0002104592,0.0003302251,0.0002421347,0.0002726634,0.0007597654],"category_scores_gemma":[0.0004708756,0.000135355,0.0005119682,0.0003174928,0.0001206891,0.0001109852,0.0002409193,0.000434993,0.0001863396],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000385051,"about_ca_system_score_gemma":0.000342795,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002406382,"about_ca_topic_score_gemma":0.003562849,"domain_scores_codex":[0.9997846,0.00002324173,0.00001480853,0.00004966379,0.00006209188,0.00006557966],"domain_scores_gemma":[0.9996549,0.000161969,0.00006089317,0.00002113855,0.00003046827,0.000070585],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002756863,0.00005381159,0.008164207,0.00005160018,0.00002007692,0.0001296399,0.00005733444,0.0005484078,0.9872863,0.00008971058,0.00003566348,0.003287614],"study_design_scores_gemma":[0.00004413847,0.001055234,0.5750105,0.00005832628,0.0002913863,0.001040641,0.000512949,0.03567216,0.3826272,0.0005158884,0.003127673,0.00004394992],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948794,0.0001483922,0.003804239,0.00002700577,0.00000485393,0.00001435486,0.0008933604,0.00002531891,0.0002031839],"genre_scores_gemma":[0.9939801,0.00009718872,0.003649196,0.0000290858,0.00000234115,0.00001699113,0.001709965,0.00002042374,0.0004948768],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002406382,"threshold_uncertainty_score":0.004784703,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01439040702869487,"score_gpt":0.2643841224631739,"score_spread":0.249993715434479,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}