{"id":"W4306918799","doi":"10.1101/2022.10.19.512884","title":"Intra-host viral populations of SARS-CoV-2 in immunosuppressed patients with hematologic cancers","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; Centre Hospitalier de l’Université de Montréal; Ontario Genomics; Université de Montréal; Institut National de Santé Publique du Québec; Montreal Heart Institute","funders":"","keywords":"Viral quasispecies; Biology; Virology; Mutation; Epitope; Immune system; Viral evolution; Virus; Monoclonal antibody; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Immunology; Antibody; Coronavirus disease 2019 (COVID-19); Genetics; Gene; Genome; Medicine; Disease; Infectious disease (medical specialty)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001428019,0.0001202076,0.0001789957,0.0003667921,0.000329901,0.0004473845,0.0001112827,0.0002431846,0.002157775],"category_scores_gemma":[0.000719899,0.00007860427,0.0001059358,0.0002881995,0.0001544606,0.0002132827,0.0002504693,0.0003173203,0.0002414069],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001536084,"about_ca_system_score_gemma":0.0001025616,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008434457,"about_ca_topic_score_gemma":0.000819702,"domain_scores_codex":[0.9998461,0.00002789157,0.00001288193,0.00005347973,0.00002018669,0.00003943573],"domain_scores_gemma":[0.9996781,0.00007223099,0.0001127513,0.00002292159,0.00003010249,0.00008383026],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006328215,0.00008368193,0.975655,0.0000184825,0.00003472632,0.0008817303,0.0004497736,0.0001331595,0.01518803,0.00009268746,0.0002829199,0.006546986],"study_design_scores_gemma":[0.00002438598,0.000525175,0.9881912,0.00001478081,0.00004612318,0.003494635,0.001227755,0.0008700133,0.004107644,0.00015363,0.001334727,0.000009995033],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995753,0.00008323528,0.0000455183,0.00001674263,0.000002076519,0.000002339486,0.00006346328,0.00000194786,0.0002093265],"genre_scores_gemma":[0.9996548,0.00003729765,0.00005663804,0.0000293445,0.000008135628,0.000002696407,0.0001152976,0.000002321442,0.00009354166],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002157775,"threshold_uncertainty_score":0.00721848,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03497750127673777,"score_gpt":0.2995879743741779,"score_spread":0.2646104730974401,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}