{"id":"W4307581779","doi":"10.1094/mpmi-06-22-0133-r","title":"Comparative Genomic Analysis of 31 <i>Phytophthora</i> Genomes Reveals Genome Plasticity and Horizontal Gene Transfer","year":2022,"lang":"en","type":"article","venue":"Molecular Plant-Microbe Interactions","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; FPInnovations; University of British Columbia","funders":"China National Funds for Distinguished Young Scientists; Biotechnology and Biological Sciences Research Council; National Institute of Food and Agriculture; Forest Growers Levy Trust; Agricultural Research Service; Ministry of Business, Innovation and Employment; Directorate for Biological Sciences; California Walnut Board; U.S. Department of Agriculture","keywords":"Phytophthora; Biology; Genome; Oomycete; Horizontal gene transfer; Phylogenetic tree; Genetics; Effector; Genome size; Genus; Gene; Host (biology); Phylogenetics; Evolutionary biology; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002007481,0.0002970117,0.0003155449,0.0006426717,0.0003372261,0.0004557912,0.0001945243,0.0003443537,0.000624531],"category_scores_gemma":[0.0004759858,0.0001559705,0.0005309471,0.0007324754,0.0001832131,0.0002993459,0.0003548908,0.0005070775,0.0002538772],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002768011,"about_ca_system_score_gemma":0.0003434444,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001366094,"about_ca_topic_score_gemma":0.002045538,"domain_scores_codex":[0.9998442,0.00001923466,0.000008449754,0.00006367316,0.00002926091,0.00003520181],"domain_scores_gemma":[0.9997094,0.0001020397,0.00007675438,0.00002659057,0.00003618131,0.00004888819],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005631854,0.00007297986,0.02016027,0.0003438087,0.00009708109,0.0002185785,0.0002447184,0.001070587,0.9536669,0.0003020973,0.0003907927,0.02286902],"study_design_scores_gemma":[0.00003782415,0.0005420424,0.8810683,0.0001122992,0.0002776311,0.00161675,0.0005034431,0.008307315,0.09183921,0.0007646655,0.01487126,0.00005930213],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9895504,0.001457039,0.002635603,0.0001090542,0.00001198486,0.00002585703,0.005220531,0.000103724,0.0008857114],"genre_scores_gemma":[0.9623631,0.00148427,0.01110249,0.0001864652,0.0000133131,0.00004732028,0.02416842,0.00006435993,0.0005702355],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001366094,"threshold_uncertainty_score":0.002716243,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01556770894577349,"score_gpt":0.2198243691492778,"score_spread":0.2042566602035043,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}