{"id":"W4307743061","doi":"10.32942/x2cc7g","title":"BPGA: an interactive Shiny application for basic population genetic analysis of genotype data","year":2022,"lang":"en","type":"preprint","venue":"","topic":"Plant and animal studies","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"National Science Foundation","keywords":"Lineage (genetic); Evolvability; Biology; Evolutionary biology; Ecology; Evolutionary dynamics; Modularity (biology); Coevolution; Body plan; Phylogenetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002183605,0.002621653,0.001696564,0.002396655,0.0008586829,0.002134866,0.00317075,0.001396152,0.2140193],"category_scores_gemma":[0.009534105,0.001954968,0.002111563,0.001739424,0.0006668104,0.002302496,0.004427659,0.002370446,0.1015933],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007467644,"about_ca_system_score_gemma":0.00178399,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006429144,"about_ca_topic_score_gemma":0.006801167,"domain_scores_codex":[0.9991979,0.0001489385,0.00007324473,0.0002343052,0.0002360341,0.0001095472],"domain_scores_gemma":[0.9971118,0.001896743,0.000149328,0.0003973469,0.0003092213,0.0001356643],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005698139,0.00008620729,0.003370546,0.001484485,0.0003011175,0.0005821291,0.0006271513,0.002319072,0.004565747,0.003907552,0.9041154,0.07807073],"study_design_scores_gemma":[0.001817607,0.0001523077,0.01812438,0.001132122,0.0002634572,0.001198627,0.0003626689,0.06207699,0.01448586,0.04642531,0.8534725,0.000488119],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.002487793,0.0002714958,0.1194288,0.0003300915,0.0002187514,0.0002714091,0.06574048,0.8057644,0.005486907],"genre_scores_gemma":[0.04295065,0.0007686968,0.3251311,0.001630604,0.0002887193,0.00373188,0.1512489,0.4523245,0.02192497],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.2140193,"threshold_uncertainty_score":0.7159659,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.129828603584135,"score_gpt":0.3080719515469433,"score_spread":0.1782433479628083,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}