{"id":"W4307827000","doi":"10.1101/2022.11.01.514706","title":"Transport and utilization of glycogen breakdown products by <i>Gardnerella</i> spp. from the human vaginal microbiome","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; University of Saskatchewan","keywords":"Maltotriose; Maltose; Biology; Microbiology; Gardnerella vaginalis; Biochemistry; Sucrose; Bacterial vaginosis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001362412,0.0002671334,0.0003369307,0.0004959213,0.0002051847,0.0007724782,0.0001210088,0.0003491038,0.001379475],"category_scores_gemma":[0.0004319132,0.0001551481,0.0002947896,0.0004381794,0.0001298128,0.0003006869,0.0003856176,0.0002510936,0.0003840365],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001165448,"about_ca_system_score_gemma":0.0001657602,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002936346,"about_ca_topic_score_gemma":0.001669458,"domain_scores_codex":[0.9998165,0.00002482226,0.00002156336,0.0000545014,0.00003465384,0.00004797701],"domain_scores_gemma":[0.9998326,0.00003323914,0.00004594851,0.00000897637,0.00004879891,0.00003034047],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007133429,0.00007113025,0.1449442,0.0003792942,0.00006161213,0.0006237003,0.0006629483,0.00009879752,0.8347276,0.00005906021,0.0002573614,0.01740092],"study_design_scores_gemma":[0.00002403513,0.0009797538,0.8078855,0.0001662438,0.0001839481,0.005079288,0.004117358,0.001216167,0.1753136,0.0001662101,0.004831148,0.0000367101],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978737,0.0007761022,0.0003116067,0.00005370355,0.000006547932,0.00001192604,0.0006003683,0.000009547914,0.0003564713],"genre_scores_gemma":[0.9966157,0.0006179422,0.00104991,0.00005596662,0.000007762386,0.00001310824,0.001066662,0.000008165519,0.0005648974],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002936346,"threshold_uncertainty_score":0.005838513,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0208821844715714,"score_gpt":0.2494968350910171,"score_spread":0.2286146506194457,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}