{"id":"W4307939670","doi":"10.3390/pathogens11111257","title":"Infection by Salmonella enterica Serovar Typhimurium DT104 Modulates Immune Responses, the Metabolome, and the Function of the Enteric Microbiota in Neonatal Broiler Chickens","year":2022,"lang":"en","type":"article","venue":"Pathogens","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Chinook Regional Hospital; University of Lethbridge; Alberta Health Services; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Public Health Agency; Public Health Agency of Canada; University of Lethbridge; Canadian Poultry Research Council; Results Driven Agriculture Research","keywords":"Metabolome; Biology; Cecum; Salmonella enterica; Salmonella; Microbiology; Ileum; Immune system; Broiler; Immunology; Metabolomics; Bacteria; Endocrinology; Food science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001033282,0.0003086948,0.0002877733,0.0001787065,0.0001155403,0.000214765,0.0001011586,0.0002203343,0.0004971874],"category_scores_gemma":[0.0001271891,0.0001830876,0.0001934781,0.00007896127,0.0001908115,0.0001741057,0.0001338432,0.0004025205,0.0001224333],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003033755,"about_ca_system_score_gemma":0.000193906,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002674371,"about_ca_topic_score_gemma":0.006103214,"domain_scores_codex":[0.9999206,0.00001213328,0.000008099236,0.00002426074,0.00001297602,0.00002184155],"domain_scores_gemma":[0.9998922,0.00001141475,0.00003475589,0.000006591532,0.00001866099,0.00003619712],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001041173,0.00005519394,0.003877483,0.00004626224,0.0000110721,0.00005534542,0.00006013134,0.00003465225,0.9939222,0.000008866497,0.0000279864,0.0008598065],"study_design_scores_gemma":[0.00005403122,0.005867862,0.5887372,0.00004368956,0.00012982,0.0003345722,0.0007945973,0.0009453226,0.4013786,0.00004401085,0.00164201,0.00002836258],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991578,0.0003749894,0.0001239061,0.00002276415,0.000007371581,0.000006066167,0.0001422629,0.000005156588,0.0001596568],"genre_scores_gemma":[0.9975035,0.0004969491,0.0003560234,0.00006754325,0.000004016252,0.00002012307,0.0003225041,0.000005890079,0.001223526],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002674371,"threshold_uncertainty_score":0.005317569,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004113399951073532,"score_gpt":0.1988639598293789,"score_spread":0.1947505598783054,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}