{"id":"W4307939670","doi":"10.3390/pathogens11111257","title":"Infection by Salmonella enterica Serovar Typhimurium DT104 Modulates Immune Responses, the Metabolome, and the Function of the Enteric Microbiota in Neonatal Broiler Chickens","year":2022,"lang":"en","type":"article","venue":"Pathogens","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Chinook Regional Hospital; University of Lethbridge; Alberta Health Services; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Public Health Agency; Public Health Agency of Canada; University of Lethbridge; Canadian Poultry Research Council; Results Driven Agriculture Research","keywords":"Metabolome; Biology; Cecum; Salmonella enterica; Salmonella; Microbiology; Ileum; Immune system; Broiler; Immunology; Metabolomics; Bacteria; Endocrinology; Food science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005558789,0.0001335402,0.0001583291,0.00003592731,0.0003068654,0.00001466829,0.0001895996,0.00006223515,0.00003067846],"category_scores_gemma":[0.00003472887,0.00007737103,0.0001119698,0.0002166648,0.0001815554,0.000003178855,0.0003652328,0.0002120941,0.000001508567],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002261552,"about_ca_system_score_gemma":0.000048179,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002433312,"about_ca_topic_score_gemma":0.00006851005,"domain_scores_codex":[0.9986378,0.0005723126,0.0002558135,0.0002479316,0.00008695071,0.0001992164],"domain_scores_gemma":[0.9993705,0.00003182162,0.0001524998,0.0003933567,0.00003108609,0.00002069859],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005683018,0.00004423948,0.005599058,0.00001253084,0.00004034079,4.524589e-7,0.0002922283,0.00003281049,0.9920539,0.00002647613,0.0008620902,0.0004675828],"study_design_scores_gemma":[0.003105894,0.0004643703,0.6327931,0.00001842591,0.00013635,0.0002442453,0.0005947308,0.0001573233,0.1349655,0.00008946101,0.2271105,0.0003200412],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9917936,0.006351298,0.00005632495,0.0008326038,0.0003229739,0.0003661452,0.0002320061,0.000005352745,0.00003971262],"genre_scores_gemma":[0.9978908,0.0009140542,0.00001682596,0.0004722611,0.00004287372,0.00004247103,0.0001066114,0.00001701824,0.0004971202],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8570884,"threshold_uncertainty_score":0.3155099,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004113399951073532,"score_gpt":0.1988639598293789,"score_spread":0.1947505598783054,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}