{"id":"W4308053104","doi":"10.1093/ecco-jcc/jjac173","title":"Increased Primary Bile Acids with Ileocolonic Resection Impact Ileal Inflammation and Gut Microbiota in Inflammatory Bowel Disease","year":2022,"lang":"en","type":"article","venue":"Journal of Crohn s and Colitis","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre Hospitalier de l’Université de Montréal","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Center for Advancing Translational Sciences; Weill Cornell Medical College; College of Veterinary Medicine, Cornell University; American Gastroenterological Association","keywords":"Ileitis; Faecalibacterium prausnitzii; Gastroenterology; Medicine; Internal medicine; Inflammatory bowel disease; Crohn's disease; Odds ratio; Gut flora; Primary sclerosing cholangitis; Ulcerative colitis; Feces; Immunology; Disease; Microbiology; Biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003623532,0.0003203768,0.000335678,0.0003892057,0.0002540573,0.000652089,0.0001305022,0.0002667364,0.001374748],"category_scores_gemma":[0.00128302,0.0001563867,0.0002827837,0.0005404238,0.000331539,0.0003179459,0.0005719272,0.0004378949,0.0001974416],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003573319,"about_ca_system_score_gemma":0.0003315216,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008296975,"about_ca_topic_score_gemma":0.001529874,"domain_scores_codex":[0.9997447,0.00006488521,0.00002963833,0.0000518398,0.00005296737,0.00005591332],"domain_scores_gemma":[0.998995,0.0001227375,0.0005794851,0.00004042167,0.0000789961,0.000183397],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001129275,0.00005053262,0.9844462,0.00008071586,0.0000684219,0.0001819944,0.00006622918,0.00006383099,0.007494558,0.00001622176,0.00006929277,0.00633281],"study_design_scores_gemma":[0.00000527442,0.0001526892,0.9985606,0.00001431621,0.00004146984,0.0003499649,0.00007951414,0.00009038732,0.0005396038,0.00002316133,0.0001408275,0.000002169673],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981567,0.001371597,0.0001209859,0.00005085517,0.000005205221,0.000004883887,0.00008516476,0.000004513257,0.0002000039],"genre_scores_gemma":[0.999196,0.0003550042,0.0002096726,0.00002613647,0.000006455659,0.000003419073,0.0001157711,0.000001764389,0.00008591061],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001374748,"threshold_uncertainty_score":0.004598975,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004215876166662174,"score_gpt":0.2339953643622469,"score_spread":0.2297794881955847,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}