{"id":"W4308117580","doi":"10.3390/v14112395","title":"Interplay between the Lung Microbiome, Pulmonary Immunity and Viral Reservoirs in People Living with HIV under Antiretroviral Therapy","year":2022,"lang":"en","type":"article","venue":"Viruses","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre Hospitalier de l’Université de Montréal; McGill University; McGill University Health Centre; Université de Montréal; Université du Québec à Montréal","funders":"Canadian Institutes of Health Research","keywords":"Immunology; Microbiome; Lung; Bronchoalveolar lavage; Immune system; CD8; Biology; Immunophenotyping; Immunity; Medicine; Flow cytometry; Internal medicine; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002507539,0.0001250554,0.0002214996,0.0003101326,0.0003411231,0.0005793339,0.0001228047,0.000261417,0.0007773279],"category_scores_gemma":[0.001018465,0.0001257927,0.0001165868,0.0002723784,0.0002464522,0.0003421597,0.0003794128,0.0002781447,0.0000698103],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001417197,"about_ca_system_score_gemma":0.0001650252,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001383716,"about_ca_topic_score_gemma":0.00311112,"domain_scores_codex":[0.9997935,0.00007757129,0.00001542375,0.00004393349,0.00003624525,0.00003340613],"domain_scores_gemma":[0.9997118,0.00008543357,0.0001248522,0.00001558737,0.00002324057,0.00003902744],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001873336,0.00004385959,0.9801946,0.00003510491,0.00006702985,0.0001792163,0.0003667219,0.00006157225,0.007081229,0.0000554139,0.00005622302,0.01167181],"study_design_scores_gemma":[0.000002644189,0.0001515343,0.997173,0.00002028164,0.00004005969,0.0005871389,0.0006508456,0.0003712036,0.0006192529,0.0001399774,0.0002403958,0.000003679127],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990275,0.0005704894,0.0001308683,0.00004199543,0.00000194114,0.000003075055,0.00003745484,0.000002073842,0.000184709],"genre_scores_gemma":[0.9996475,0.0001215646,0.0001045515,0.00001882147,0.000004148606,0.000002302376,0.00002452132,5.730449e-7,0.00007608267],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001383716,"threshold_uncertainty_score":0.00275135,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01728047952707507,"score_gpt":0.2820959347803722,"score_spread":0.2648154552532971,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}