{"id":"W4308119840","doi":"10.3390/pathogens11111284","title":"Phylogenetic Inference of the 2022 Highly Pathogenic H7N3 Avian Influenza Outbreak in Northern Mexico","year":2022,"lang":"en","type":"article","venue":"Pathogens","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Canadian Science Centre for Human and Animal Health","funders":"Secretaría de Agricultura, Ganadería, Desarrollo Rural, Pesca y Alimentación; Canadian Food Inspection Agency","keywords":"Outbreak; Transmission (telecommunications); Influenza A virus subtype H5N1; Geography; Biosecurity; Phylogenetic tree; Biology; Virology; Virus; Ecology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004982539,0.000190062,0.0002266484,0.0008427014,0.0009339325,0.0005454926,0.0002032701,0.000323808,0.0007205835],"category_scores_gemma":[0.0006563077,0.0001314302,0.0003092937,0.0008115759,0.0002089255,0.0001419186,0.0004610368,0.0003280681,0.000123649],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008047106,"about_ca_system_score_gemma":0.0004389991,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.017588,"about_ca_topic_score_gemma":0.02143104,"domain_scores_codex":[0.9998026,0.000040442,0.00001078871,0.00008077921,0.0000218131,0.00004345651],"domain_scores_gemma":[0.9996815,0.00004948394,0.000151486,0.00002569202,0.00005159412,0.00004024712],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006103807,0.00009307446,0.9382228,0.00007826243,0.0001404542,0.0006848474,0.001604902,0.001491746,0.04104462,0.0003722695,0.0004979399,0.01515878],"study_design_scores_gemma":[0.000007250872,0.00005489118,0.9946187,0.00002380573,0.00004657106,0.0001983371,0.0007778568,0.00170779,0.0006189976,0.00004539291,0.001893887,0.000006503049],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985912,0.0001224871,0.000332179,0.00004010795,0.000003330332,0.000008133494,0.000271417,0.000004474555,0.0006266028],"genre_scores_gemma":[0.9963439,0.0001988495,0.001438448,0.00003327977,0.000006260517,0.00001698913,0.001759185,0.000004624315,0.0001985192],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.017588,"threshold_uncertainty_score":0.03497124,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04814074366002526,"score_gpt":0.3289920277941509,"score_spread":0.2808512841341256,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}