{"id":"W4308125653","doi":"10.3389/fcimb.2022.1049646","title":"The environment, the tick, and the pathogen – It is an ensemble","year":2022,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of General Medical Sciences; U.S. Department of Agriculture; National Institute of Food and Agriculture; National Institutes of Health; National Science Foundation","keywords":"Ixodes scapularis; Tick; Borrelia burgdorferi; Lyme disease; Biology; Ixodes; Tick-borne disease; Pathogen; Abiotic component; Ecology; Host (biology); Borrelia; Transmission (telecommunications); Zoology; Ixodidae; Virology; Immunology","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.001274142,0.0004842637,0.001013183,0.0001543651,0.001433817,0.00007125921,0.0004038266,0.0005584332,0.0004872099],"category_scores_gemma":[0.00009141421,0.0002473205,0.0003365088,0.0001862229,0.001873941,0.00006538325,0.0003950128,0.001138176,0.00007915533],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001430236,"about_ca_system_score_gemma":0.0001034725,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001844651,"about_ca_topic_score_gemma":0.00005579189,"domain_scores_codex":[0.9948618,0.003334259,0.0006044816,0.0006640529,0.0000274796,0.0005078848],"domain_scores_gemma":[0.9981619,0.0007077932,0.0003900875,0.0006950389,0.00001428043,0.00003088965],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001740256,0.0002681129,0.001305331,0.0006629145,0.00186741,0.00001318083,0.001118437,0.000003838948,0.001713582,0.0008748537,0.07629143,0.9157069],"study_design_scores_gemma":[0.0009318121,0.0001545906,0.00002121003,0.0000651611,0.0006940239,0.000433339,0.0001998406,0.000003062327,0.00004329855,0.0003451126,0.996816,0.0002925909],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.000501182,0.9947156,0.000267006,0.0002156425,0.002405792,0.001216289,0.0001662281,0.00003531445,0.00047693],"genre_scores_gemma":[0.0004791907,0.9964043,0.000009200549,0.0005198724,0.0000732872,0.0003924472,0.00052991,0.0000469929,0.001544802],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9205245,"threshold_uncertainty_score":0.9999979,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01695725326979337,"score_gpt":0.2354210650152467,"score_spread":0.2184638117454533,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}