{"id":"W4308387594","doi":"10.1016/j.isci.2022.105519","title":"Implications of differential transcription start site selection on chronic myeloid leukemia and prostate cancer cell protein expression","year":2022,"lang":"en","type":"article","venue":"iScience","topic":"DNA and Nucleic Acid Chemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Trent University; Nottingham Trent University","keywords":"Myeloid leukemia; Promoter; Transcription (linguistics); Biology; Transcription factor; Untranslated region; Prostate cancer; Cancer research; Computational biology; Cell biology; Bioinformatics; Messenger RNA; Genetics; Cancer; Gene expression; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004866367,0.00006751691,0.00005225644,0.00001255028,0.0001837681,0.000009235327,0.00009714845,0.00003013301,0.00008268596],"category_scores_gemma":[0.000002772779,0.00006395365,0.00002296474,0.00007092347,0.00006641896,0.000006383479,0.0000607239,0.00006480439,3.828773e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008719408,"about_ca_system_score_gemma":0.0001246069,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000451891,"about_ca_topic_score_gemma":0.00002903073,"domain_scores_codex":[0.9994028,0.00001920387,0.00009235398,0.0002509688,0.000114803,0.0001199331],"domain_scores_gemma":[0.9997557,0.000001561649,0.00006207339,0.0001222704,0.00002368039,0.00003466374],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004661669,0.00003189202,0.0005580393,0.00002651598,0.000001519012,7.011278e-8,0.0001047487,0.0002041332,0.9961411,0.000006214449,0.0001854305,0.00269375],"study_design_scores_gemma":[0.000235095,0.0003217877,0.002229437,0.00001088567,0.00000432957,0.000001966579,0.00004937024,0.0001970511,0.9941902,0.00001941476,0.002664173,0.00007625158],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984925,0.0004993181,0.0002606917,0.0000657402,0.00003967594,0.0001658252,0.00005736328,0.00000720022,0.0004116863],"genre_scores_gemma":[0.9987202,0.0001381032,0.00006176835,0.00002254892,0.00004175765,0.0001237506,0.000035045,0.000006320225,0.0008505375],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002617499,"threshold_uncertainty_score":0.2607954,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005968406385844833,"score_gpt":0.2234217766065943,"score_spread":0.2174533702207495,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}