{"id":"W4308455072","doi":"10.1007/978-1-0716-2819-5_14","title":"Phasing DNA Methylation","year":2022,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of British Columbia; Canada's Michael Smith Genome Sciences Centre","funders":"","keywords":"Haplotype; Genetics; DNA methylation; Biology; DNA sequencing; Computational biology; DNA; Nanopore sequencing; Allele; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00134673,0.0009486263,0.0009624317,0.001014461,0.0007123584,0.0009838345,0.0009093799,0.001076187,0.006909382],"category_scores_gemma":[0.003416847,0.0009867445,0.001035818,0.001234586,0.0006875598,0.0009775655,0.001431712,0.002608547,0.002761033],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003719903,"about_ca_system_score_gemma":0.0008247226,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009601,"about_ca_topic_score_gemma":0.001745982,"domain_scores_codex":[0.9989064,0.0002387296,0.00004844377,0.0004187924,0.0003099516,0.00007771555],"domain_scores_gemma":[0.9988884,0.0004051092,0.00009192558,0.0004565685,0.0001127165,0.0000452513],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003203459,0.00006175815,0.002595155,0.0006125356,0.000242522,0.0001220874,0.0003392359,0.006906454,0.7106037,0.02290019,0.002494906,0.2528012],"study_design_scores_gemma":[0.00004309113,0.0001960908,0.00345196,0.00005444102,0.0001203302,0.0003920438,0.0001103741,0.04061154,0.8796982,0.0205119,0.05473499,0.00007513427],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.03044508,0.001288054,0.959535,0.0002391471,0.0002654234,0.0001182973,0.001026389,0.00216045,0.004922155],"genre_scores_gemma":[0.1803965,0.002018716,0.799884,0.0003833881,0.0001085697,0.0004819897,0.002421729,0.0008858498,0.01341933],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.006909382,"threshold_uncertainty_score":0.02311414,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02294742818467236,"score_gpt":0.3936139779758468,"score_spread":0.3706665497911744,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}