{"id":"W4308455789","doi":"10.1007/978-1-0716-2819-5_12","title":"Chromosome-Length Haplotypes with StrandPhaseR and Strand-seq","year":2022,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Genetic Mapping and Diversity in Plants and Animals","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"Canadian Institutes of Health Research","keywords":"Haplotype; Chromosome; Sequence (biology); DNA sequencing; Genetics; Genome; Biology; Sample (material); Computational biology; Computer science; DNA; Gene; Physics; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002687829,0.001113544,0.001478579,0.00162775,0.001395561,0.001677093,0.001549779,0.001034632,0.01737237],"category_scores_gemma":[0.004461998,0.001554699,0.002047186,0.001974995,0.0007044805,0.001154357,0.001521769,0.002945392,0.008811142],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004851354,"about_ca_system_score_gemma":0.001291518,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00247133,"about_ca_topic_score_gemma":0.01021841,"domain_scores_codex":[0.9987668,0.0001794693,0.00009140233,0.0006602121,0.0002161739,0.00008590566],"domain_scores_gemma":[0.9975756,0.0009109794,0.0002639215,0.000824119,0.0002841199,0.0001412914],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002998681,0.0003879702,0.0187137,0.005436267,0.002570971,0.0006062826,0.002963132,0.01830212,0.5703155,0.02525602,0.0872587,0.2651906],"study_design_scores_gemma":[0.001348642,0.0003813032,0.03484888,0.0004547852,0.002116596,0.0008449732,0.0005334266,0.1116537,0.3451157,0.04463902,0.457462,0.0006009425],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.06628527,0.0006423663,0.6489435,0.0002773327,0.0007297022,0.0009310372,0.2405206,0.0304746,0.01119563],"genre_scores_gemma":[0.0829878,0.0003844,0.7278134,0.0006196914,0.0001603311,0.001968319,0.1625936,0.01546077,0.00801161],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.01737237,"threshold_uncertainty_score":0.05811638,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0142133494846385,"score_gpt":0.3174123828688205,"score_spread":0.303199033384182,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}