{"id":"W4308544300","doi":"10.1016/j.ygyno.2022.10.022","title":"Profiling the immune landscape in mucinous ovarian carcinoma","year":2022,"lang":"en","type":"article","venue":"Gynecologic Oncology","topic":"Cancer Immunotherapy and Biomarkers","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; University of British Columbia; Vancouver General Hospital; Canada's Michael Smith Genome Sciences Centre; Foothills Medical Centre; BC Cancer Agency","funders":"National Cancer Institute; Cancer Council Tasmania; National Health and Medical Research Council; Medical Research Council; Horizon 2020 Framework Programme; Oak Foundation; BC Cancer Foundation; Canada Research Chairs; Cancer Research Society; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Cancer Council Victoria; University of New South Wales; Canadian Institutes of Health Research; Cancer Institute NSW; European Commission; Calgary Laboratory Services; University of Cambridge; University College London; Cancer Research UK; Michael Smith Health Research BC; Faculty of Medicine and Health, University of Sydney; Translational Cancer Research Network; European Regional Development Fund; Bundesministerium für Bildung und Forschung; National Institute for Health and Care Research; Cancer Council NSW; Ovarian Cancer Australia; Peter MacCallum Foundation; Medical Research and Materiel Command; NSW Ministry of Health; Cancer Council South Australia; Deutsches Krebsforschungszentrum; Ovarian Cancer Research Fund; Cancer Australia; National Institutes of Health","keywords":"CD20; FOXP3; CD68; Stromal cell; Immune system; CD8; Medicine; Cancer research; Tissue microarray; CD3; Tumor microenvironment; Pathology; Immunohistochemistry; Oncology; Immunology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001155994,0.0001295773,0.0003587081,0.0001318547,0.0002888234,0.000007370582,0.000234826,0.0001135358,0.003517952],"category_scores_gemma":[0.0001155863,0.00008816882,0.0001202935,0.0004397787,0.0001119698,0.00002247897,0.0001809413,0.0005659905,0.00001978799],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006381346,"about_ca_system_score_gemma":0.0005327478,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002377145,"about_ca_topic_score_gemma":0.0001867713,"domain_scores_codex":[0.9984533,0.0003469654,0.0003746837,0.0002774652,0.0001598935,0.0003877496],"domain_scores_gemma":[0.9990833,0.0003895268,0.0001308096,0.000329777,0.00002683632,0.00003978641],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.009580609,0.002130538,0.80986,0.00007018086,0.0002688841,0.0028293,0.003093084,0.0002305643,0.02960778,0.002521807,0.005277749,0.1345295],"study_design_scores_gemma":[0.007330475,0.004602772,0.8371256,0.000004396717,0.00005799427,0.0008665969,0.004770813,0.000481851,0.0006268579,0.0002192619,0.1437357,0.0001777318],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.961761,0.002668745,0.000004146695,0.009818392,0.0009463933,0.000835695,0.000007711991,0.00005520751,0.02390269],"genre_scores_gemma":[0.9945167,0.00006493059,0.0002820478,0.003513059,0.00009769476,0.000446468,0.00003419254,0.00001388991,0.001031063],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1384579,"threshold_uncertainty_score":0.997393,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0214616632161296,"score_gpt":0.2847816725541987,"score_spread":0.2633200093380691,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}