{"id":"W4308742135","doi":"10.1016/j.micpath.2022.105873","title":"Colonic innate immune defenses and microbiota alterations in acute swine dysentery","year":2022,"lang":"en","type":"article","venue":"Microbial Pathogenesis","topic":"Veterinary medicine and infectious diseases","field":"Veterinary","cited_by":8,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Alberta; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Abbott Animal Health; Alberta Agriculture and Forestry","keywords":"Mucus; Innate immune system; Immunology; Lamina propria; Biology; Microbiology; Colitis; Microbiome; Cathelicidin; Immune system; Colonisation resistance; Antibiotics; Epithelium","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002120197,0.0002385247,0.0003288289,0.0003024991,0.0004308577,0.00004410458,0.0001779646,0.00005181624,0.0006258941],"category_scores_gemma":[0.00002206054,0.0002598613,0.000115967,0.0003908042,0.00008156613,0.0001326029,0.0004544652,0.0001907659,0.00004033056],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001343927,"about_ca_system_score_gemma":0.0000776173,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003609103,"about_ca_topic_score_gemma":0.00006544733,"domain_scores_codex":[0.9984297,0.0002385812,0.0004265032,0.0004320365,0.0001068187,0.0003664301],"domain_scores_gemma":[0.999418,0.00005048959,0.0001023669,0.0003141716,0.00003534675,0.00007962157],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005066143,0.0003417624,0.002782826,0.0000386634,0.00006509281,0.001229987,0.0004315491,0.00002279203,0.9920326,0.0000156228,0.001751873,0.0007805866],"study_design_scores_gemma":[0.0130909,0.01389915,0.7845979,0.0003296715,0.001011809,0.0340902,0.002146826,0.0004979647,0.0265517,0.0002273305,0.1204555,0.003101118],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962037,0.001573424,0.00002756708,0.0004441875,0.0005012061,0.0003833539,0.0006225088,0.00008705806,0.0001569733],"genre_scores_gemma":[0.99809,0.0001289444,0.0001417687,0.0008047207,0.0001045349,0.0001361851,0.0002402151,0.00004416276,0.0003094856],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9654809,"threshold_uncertainty_score":0.9999853,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02508706791095245,"score_gpt":0.2789512108359545,"score_spread":0.253864142925002,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}