{"id":"W4308769667","doi":"10.1038/s41564-022-01268-9","title":"Divergent SARS-CoV-2 variant emerges in white-tailed deer with deer-to-human transmission","year":2022,"lang":"en","type":"article","venue":"Nature Microbiology","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":236,"is_retracted":false,"has_abstract":true,"ca_institutions":"Sunnybrook Health Science Centre; Sinai Health System; Institute of Infection and Immunity; University of Ottawa; University of Guelph; Trent University; Public Health Ontario; University of Toronto; Western University; Sunnybrook Hospital; Dalhousie University; Centre Hospitalier de l’Université de Montréal; Ministry of Natural Resources and Forestry; Ministry of Health and Long Term Care; University of Manitoba; Ministère des Ressources naturelles et des Forêts; Université de Montréal; Canadian Food Inspection Agency","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Environment and Climate Change Canada; Ontario Ministry of Research, Innovation and Science; Association of Medical Microbiology and Infectious Disease Canada; Génome Québec; University of Ottawa; Public Health Agency of Canada; Ministère de la Santé et des Services sociaux; Ministère de la Santé; Genome Canada; Canadian Food Inspection Agency; McMaster University; Public Health Agency; Dalhousie University; Ontario Ministry of Natural Resources and Forestry","keywords":"Transmission (telecommunications); Virology; Biology; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); White (mutation); Coronavirus disease 2019 (COVID-19); Disease transmission; 2019-20 coronavirus outbreak; Zoology; Gene; Medicine; Genetics; Infectious disease (medical specialty); Outbreak","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004549776,0.0002951231,0.0005295454,0.0005466299,0.0002318735,0.00001227618,0.0003926829,0.0004189011,0.0002513064],"category_scores_gemma":[0.00004554524,0.0002220198,0.0001233034,0.0008200557,0.00009128078,0.00003468928,0.0002464572,0.001838607,0.00004985596],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003064515,"about_ca_system_score_gemma":0.0002451808,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000127304,"about_ca_topic_score_gemma":0.0004490346,"domain_scores_codex":[0.9977705,0.0002593405,0.0003444019,0.0007045697,0.0002372332,0.0006839529],"domain_scores_gemma":[0.9992746,0.00005573814,0.00006524675,0.0004227193,0.0001269486,0.00005480891],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001439559,0.0003681075,0.09422691,0.00005323588,0.00009134703,0.0006319914,0.0005245851,0.000005220244,0.8930005,0.0001132364,0.008738519,0.0008067865],"study_design_scores_gemma":[0.003516402,0.00139491,0.01145324,0.00005031732,0.0000563937,0.0005449278,0.00008656475,0.00002033561,0.3765082,0.00006463678,0.6059834,0.0003206828],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9921002,0.001489067,0.0002909286,0.004032846,0.0003051411,0.0008704083,0.0000558593,0.00007575219,0.0007797509],"genre_scores_gemma":[0.9397365,0.000004700182,0.0005149501,0.05919359,0.00009497104,0.0001288108,0.00009836331,0.00004697331,0.0001811056],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5972448,"threshold_uncertainty_score":0.9053703,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01811157783122508,"score_gpt":0.3197388853597946,"score_spread":0.3016273075285695,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}