{"id":"W4308769667","doi":"10.1038/s41564-022-01268-9","title":"Divergent SARS-CoV-2 variant emerges in white-tailed deer with deer-to-human transmission","year":2022,"lang":"en","type":"article","venue":"Nature Microbiology","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":236,"is_retracted":false,"has_abstract":true,"ca_institutions":"Sunnybrook Health Science Centre; Sinai Health System; Institute of Infection and Immunity; University of Ottawa; University of Guelph; Trent University; Public Health Ontario; University of Toronto; Western University; Sunnybrook Hospital; Dalhousie University; Centre Hospitalier de l’Université de Montréal; Ministry of Natural Resources and Forestry; Ministry of Health and Long Term Care; University of Manitoba; Ministère des Ressources naturelles et des Forêts; Université de Montréal; Canadian Food Inspection Agency","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Environment and Climate Change Canada; Ontario Ministry of Research, Innovation and Science; Association of Medical Microbiology and Infectious Disease Canada; Génome Québec; University of Ottawa; Public Health Agency of Canada; Ministère de la Santé et des Services sociaux; Ministère de la Santé; Genome Canada; Canadian Food Inspection Agency; McMaster University; Public Health Agency; Dalhousie University; Ontario Ministry of Natural Resources and Forestry","keywords":"Transmission (telecommunications); Virology; Biology; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); White (mutation); Coronavirus disease 2019 (COVID-19); Disease transmission; 2019-20 coronavirus outbreak; Zoology; Gene; Medicine; Genetics; Infectious disease (medical specialty); Outbreak","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002397173,0.0001568114,0.0002044985,0.0004879238,0.0003227536,0.0004202141,0.0001259609,0.0002009538,0.0003903314],"category_scores_gemma":[0.000380155,0.0001313538,0.0001627955,0.000399451,0.0003065478,0.0001286639,0.0001908042,0.000177979,0.0001127461],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002199993,"about_ca_system_score_gemma":0.0002189267,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004195473,"about_ca_topic_score_gemma":0.01016813,"domain_scores_codex":[0.9998209,0.00002613698,0.00001236595,0.00006540565,0.00002697692,0.00004823736],"domain_scores_gemma":[0.9998038,0.00003022728,0.00006852578,0.00001892944,0.00003352559,0.00004497456],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004661497,0.00005423691,0.9160196,0.00001432535,0.00005272743,0.0007026218,0.0005834288,0.0001259293,0.07920009,0.00006716893,0.00004921711,0.002664437],"study_design_scores_gemma":[0.000006386351,0.0001383245,0.9936953,0.000005558313,0.00001648421,0.001464234,0.0007212132,0.000332954,0.003302235,0.00004926627,0.0002625338,0.000005519899],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9998388,0.00001643735,0.00003615882,0.000001974749,2.962671e-7,0.00000127924,0.00003003434,5.97934e-7,0.00007445271],"genre_scores_gemma":[0.9995908,0.0000222175,0.0001226367,0.0000101182,9.621195e-7,0.000001675032,0.0001710019,0.000001140151,0.00007946807],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004195473,"threshold_uncertainty_score":0.008342147,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01811157783122508,"score_gpt":0.3197388853597946,"score_spread":0.3016273075285695,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}